Bhae000700.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus haemorrhoidalis
Gene Symbol
-
Assembly
GCA_014825975.1
Location
CM026164.1:3069460-3074752[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.094 8.5 7.1 6.7 1 23 115 137 115 137 0.97
2 16 4.2e-06 0.00038 20.8 2.0 1 23 143 165 143 165 0.98
3 16 0.06 5.4 7.7 1.9 1 23 172 195 172 195 0.94
4 16 2.5e-06 0.00023 21.5 1.3 1 23 201 223 201 223 0.97
5 16 0.67 61 4.5 3.9 2 20 229 247 228 251 0.82
6 16 7.2e-06 0.00065 20.1 2.4 1 23 258 280 258 280 0.97
7 16 1.3e-07 1.2e-05 25.6 1.0 1 23 284 306 284 306 0.99
8 16 0.023 2.1 9.1 1.1 1 23 312 334 312 334 0.94
9 16 3.6e-06 0.00032 21.1 0.6 1 23 340 362 340 362 0.99
10 16 7e-07 6.3e-05 23.3 2.7 1 23 502 524 502 524 0.98
11 16 0.003 0.27 11.8 2.3 2 23 530 551 529 551 0.96
12 16 0.00023 0.021 15.4 1.5 1 23 558 581 558 581 0.97
13 16 3.2e-06 0.00029 21.2 2.3 1 23 587 610 587 610 0.93
14 16 0.00013 0.012 16.1 5.5 2 22 616 636 615 640 0.92
15 16 1.7e-06 0.00016 22.0 2.7 1 23 673 695 673 695 0.98
16 16 1.5e-05 0.0014 19.1 0.5 1 23 699 721 699 721 0.97

Sequence Information

Coding Sequence
ATGGCATCCAGTAGGTACAATGCGCTAGATCCACTCGCCCCAACTTTTCTGATAGTAAAACTAGAAGATAATTACTTTCGGATACCGACGTCGCTGAGTGTGTTCATGATGAAGGAACCGCCACCGGGTTCCACCGAAGAAAAGAAGGCTCAACCAGCTAAAGAAGATGCCGTTCATTCAACAAAGACAAATCAGACAGAAGAAAAAATAAAGGACGATTCAAGTAGCAACGATTCCTTCGAAGATCTCGACGACGCCCCCTTGGACTTCCGAAAGAGAGAACAGGAGCAAGAACAGGAGAAAAATAAATCTGTGAAGCCAATACTCCCTAAAAAGAAAGTACACACGTGCGAGATCTGTTACGCGACTTTCGATCGTAAAAGTAAACATACACGGCACATGTTCAAACACAGTAACTCGAGACCTCATAAGTGTCCTATTTGCGCGAAAGGATTCAAAACCACAGCTCATCTAAGCAGGCACATGGAGGTTCACGATGAACCGGTAAACCTACATGCATGTAGTCTGTGTGACTTCAAAGCACGCACCAAGCCTTACCTGAAGATCCATTATATTAGAAAGCACACAGAAGACTACAACTATAAATGTGAACAATGTGGAAAGATGTTTAAGGTACAATCAGATTATACGACACATGTGAAAGATCATGATACAGAGTCTTGCGTGTGTGATATCTGTGGCTCGTCTTATCCTAGCAAAAGCTCGCTGTACTTCCATAAGCATTACAAGCACAAGACGAAGGTGAAGAAGTTCCCCTGTCAGACATGTAAGAAGAAGTTCAAGACGCAGAAGAATTTAGATAACCATATGGAGCTGCACAAGATTAAATACGTTTGTGAACAATGCGGGATGGAATTTAAGACGAAATATGGCCTCACCAAGCATCTGAGGACTCATTCCGGGGAGAAGTCTTATTTGTGCGCGATTTGCGGGAAAACTTTCGGATGTCTCAGCTCGCAGAAGATTCATCTGTTGACGCACGTTGGCGAAAGGCCTTACGTATGCGACATTTGTGGTCAGAGTTTCACCCAGAGGTCACCAATGATGTTGCATCGCAGAAAGCACCCTGGAGTGCACCCACCACCTCCTCCCATTAAAATAACAAACCTGCTACATGGTGTACAAGACAAAATAATCGTGAACAAGAGTAGCAAGTCGACACAGCGTGATCCGCTCGAGCAAACGTACCTCGTGGTGCAAAACGTCGACAAATACTTCCTCCTTCCCATGGAGCACAAAACATCGGCACAGAAACACGAAGAAGAGTGCATTACTGGAGATATCACCATCAAGTTGGAGGAACAAGACATACCCGAAGATACGACTGAACAACAGCTGATCGAATCTGAGGGAAAAGATGCTCAAATTGACGAAACTGCTCAGGTACATACGCATCTATCTGTTCAGACGCCTGTACAATTTTCTCAGTGGTTGGACCAATGTTCCAATGGTTCTGAAAGTATGACGAGCAACGAGGAAACGTTTACTTGCGACTATTGTTCGAAGATGTTCAGGAAGAAGTACGCGTTGCAGAGGCATTTAGAGACTCATAGTAACGCACGGGTGGAATGTTCGGTGTGCCATCGACTCCTAAAGACCAAGAAGACGTTGAAGCTTCATATGATGCTGCACGAAGATACCGGTAAAATATTCGAGTGTTCGGAATGCGGCTTTATGTCGAAACGAAAGCAAAGTATGACTCGTCATCAGATCAGGATGCACTCGAAAATCGCCGATTACAAATGTCCACTTTGCCCGAAGACGTTTAAATTCAACGGTGATCTTAAAAGACATCATGAAGCGAAACACGTGGTCGACCCATGTTATTGCGAGATTTGTGGAAAAACGTATCGAAATAGTCATTTTCTTCGAAAGCACCGGCGCATATCCAAGACACATAGAAACGCTTACACTCGTGTGTGTTACGGGGCAATTAGGGGTAATCAGAACATAGAGTGTGCGAGCTCGCAAAACAAGGGTAAAGTGAAGCGAGTATTCAATTGCTCCAAGTGCAAATGGCGATTCAGCAGCTGGAGGTTACTAAATAAGCACATGCAACGACATCTCCTCATCTTTAACTGCGACATTTGTGGAGCCGTGTTTAAGTATAAGGCTTCGTTTTTGAAGCATCAAGAATCGCACAAACAATCTGAACAGTTTTAA
Protein Sequence
MASSRYNALDPLAPTFLIVKLEDNYFRIPTSLSVFMMKEPPPGSTEEKKAQPAKEDAVHSTKTNQTEEKIKDDSSSNDSFEDLDDAPLDFRKREQEQEQEKNKSVKPILPKKKVHTCEICYATFDRKSKHTRHMFKHSNSRPHKCPICAKGFKTTAHLSRHMEVHDEPVNLHACSLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHVKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKKFPCQTCKKKFKTQKNLDNHMELHKIKYVCEQCGMEFKTKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSSKSTQRDPLEQTYLVVQNVDKYFLLPMEHKTSAQKHEEECITGDITIKLEEQDIPEDTTEQQLIESEGKDAQIDETAQVHTHLSVQTPVQFSQWLDQCSNGSESMTSNEETFTCDYCSKMFRKKYALQRHLETHSNARVECSVCHRLLKTKKTLKLHMMLHEDTGKIFECSECGFMSKRKQSMTRHQIRMHSKIADYKCPLCPKTFKFNGDLKRHHEAKHVVDPCYCEICGKTYRNSHFLRKHRRISKTHRNAYTRVCYGAIRGNQNIECASSQNKGKVKRVFNCSKCKWRFSSWRLLNKHMQRHLLIFNCDICGAVFKYKASFLKHQESHKQSEQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00228336;
90% Identity
iTF_00215167;
80% Identity
iTF_00220152;