Basic Information

Insect: Bombus bifarius
Gene Symbol: -
Assembly: GCA_011952205.1
Location: NW:1521675-1554762[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.7e-06 0.00011 21.7 1.7 1 23 299 321 299 321 0.98

2 9 1.6e-08 1.1e-06 28.1 1.6 3 23 329 349 327 349 0.98

3 9 0.00013 0.0081 15.8 0.4 1 23 355 377 355 377 0.98

4 9 7e-07 4.5e-05 22.9 1.5 1 23 383 405 383 405 0.99

5 9 1.2e-05 0.00079 19.0 1.7 2 23 519 540 518 540 0.96

6 9 1.6e-09 1e-07 31.3 1.6 1 23 546 568 546 568 0.98

7 9 0.00036 0.023 14.4 0.6 3 23 576 596 574 596 0.97

8 9 4.8e-05 0.0031 17.2 1.4 1 23 602 624 602 624 0.99

9 9 0.011 0.69 9.8 0.8 1 23 630 654 630 654 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.7e-06	0.00011	21.7	1.7	1	23	299	321	299	321	0.98
2	9	1.6e-08	1.1e-06	28.1	1.6	3	23	329	349	327	349	0.98
3	9	0.00013	0.0081	15.8	0.4	1	23	355	377	355	377	0.98
4	9	7e-07	4.5e-05	22.9	1.5	1	23	383	405	383	405	0.99
5	9	1.2e-05	0.00079	19.0	1.7	2	23	519	540	518	540	0.96
6	9	1.6e-09	1e-07	31.3	1.6	1	23	546	568	546	568	0.98
7	9	0.00036	0.023	14.4	0.6	3	23	576	596	574	596	0.97
8	9	4.8e-05	0.0031	17.2	1.4	1	23	602	624	602	624	0.99
9	9	0.011	0.69	9.8	0.8	1	23	630	654	630	654	0.95

Sequence Information

Coding Sequence: ATGGCGCTCTCCGCACAGAACCAGTCGACGTCGTACGTGAACTTATATTACTCGATCGTCCAACGTGCGGCGACACGCTACTTTAAGGAATATTACAACTCCGATACTGGCGCGCCCTACGTATTATACAAGGACAACATGGAGAGACCCCAGGGGCAATGGGGCCCCGGGCCGGGATCTCTCCAGGACGGGGGACTGTACCcgcagcaacagcaacaacagcaacagcaggGCTCCTCCTCGTCCGGCAGTCCACAGCAGGCCTGTGGTCCTCCTGTCGAGGGAGAAAGCGGTCCCCCGCCTTCGTTGGCCTCTCCCGTGCCCTCACCGTACCCCTCGGCACCGCCTGAGCCTCAAGCCTTAACCCCACCTGACGACGATATACAATCGAATCAAGCCACCTCtcagcagcaacaacaacaacagcagcagcagcaacaacaacaacaacagaCGCAACAGCAAGttcagcagcagcagcagcaacaacaacaacaagttcagcagcaacaacagcaacagcaacaacagcagaCGCAACAACAGGATCACTCGCCTCAACAACAACTAACGCCTCACGAGGTGGATCGCAGTGATTGCTTCCCCGGCGCTGGAGAGTTGCAGCAATATCCACAGCACTATTTCAAGGATGCCAGGCCGCATCCGTCGCCGTCGGTACCCCCGCACATGCTCACCCCCGGTGGCTTCTCCGCGTTACACTATCTCAAGCAACCAGGCGTCATGCTGACGTCCCTCGGCCAGGGTGACGGCGGACCCAGTTTGGATGCTCACCAATACGCAAGTCCCGGGGCGCCAAACATGGCGACTGGGTTGCCGGATATCGTGCAACAGAGCGGCAAGTCCGGGAAAGGGGCGAACAGCGATCTACGTTTGTTCAAGTGTCTGACGTGCGGGAAAGATTTTAAGCAGAAGTCGACGCTGCTTCAACACGAGCGGATCCATACGGACAGTCGGCCATACGGGTGTCCAGAATGCGGGAAGCGGTTCAGGCAACAATCGCATCTAACGCAGCACCTGCGCATACACGCGAACGAGAAGCCGTATGCTTGCGTGTACTGCGAGCGTACGTTCCGGCAGCGTGCGATCCTCAACCAGCATCTGCGCATCCACTCGGGTGAGAAGCCATACCAATGTCCGGAGTGCGGAAAACACTTCCGTCAGAAGGCGATCCTGAATCAGCACGTCCGCACACACCAAGACGTGAGTCCGCATCTGATCTTCAAGAATGGAATGACGCCAACACTCTGGCCGCAGGATGTTCCATTTCCACCGGAGGAGGGCAAGGAGGAGGTGGCATCGACGTTCGGCGACACGGACACACAGTCGGGCGCGTTCAGTCCGGCGCCGGACGCGAATTCCATCCAGTATCCCGCTTACTTCAAGGACCCGAAGGGCGGGAATCACGCGGTTTTCGGTGCCGGCGGCGCAGGTAGCTTCGGTGCTCTGCAGTATATCAAGCAACAGGGCGGTAGTAAGAGCTGTTTACCGGACGTGATACAGCACGGCCGCTCCGCGGGGATGCCGTTGTACGTGCGATGTCCGATCTGTCAGAAGGAATTTAAGCAAAAATCGACGCTGCTGCAGCACGGCTGCATACACATCGAATCGCGACCGTATCCTTGCCCGGAGTGCGGCAAAAGGTTCAGGCAACAATCGCACTTGACCCAACACCTTCGCATTCACACGAACGAAAAGCCGTACGGCTGCGTTTATTGCGGCCGCAACTTCCGTCAACGTACCATCCTGAATCAACATTTGCGCATTCATACCGGCGAGAAGCCGTACAAGTGTCAACAGTGCGGCAAAGATTTCCGTCAGAAGGCGATACTGGATCAGCACACGCGCACCCATCAAGGTGACCGGCCGTTTTGCTGTCCGATGCCAAACTGCAGGCGGCGTTTCGCCACCGAGCCAGAGGTGAAGAAGCACATCGACAACCATATGAATCCGCACGCGGCCAAGGTGCGTAGGAACTCGAGCAGCGACTCGAAACCACCCGGTACACCGGCTGGTTTAGGCCCTGTCCCTGTACCTAGAGGTCTTACGCCGACGGTGGTGAAGCCAGAGCTCTATTTCCCGCAATGTTACGCGCCCGCGTTCAATCATCAACCGCCAGTGTCGACGGCACAATTCCCGGCCCAGGCGAACGGGGTATCCGTTGCCGGCGAATTCAAACCACCGACCGGTCTGCCGCCGCAGTGA
Protein Sequence: MALSAQNQSTSYVNLYYSIVQRAATRYFKEYYNSDTGAPYVLYKDNMERPQGQWGPGPGSLQDGGLYPQQQQQQQQQGSSSSGSPQQACGPPVEGESGPPPSLASPVPSPYPSAPPEPQALTPPDDDIQSNQATSQQQQQQQQQQQQQQQQTQQQVQQQQQQQQQQVQQQQQQQQQQQTQQQDHSPQQQLTPHEVDRSDCFPGAGELQQYPQHYFKDARPHPSPSVPPHMLTPGGFSALHYLKQPGVMLTSLGQGDGGPSLDAHQYASPGAPNMATGLPDIVQQSGKSGKGANSDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYQCPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGMTPTLWPQDVPFPPEEGKEEVASTFGDTDTQSGAFSPAPDANSIQYPAYFKDPKGGNHAVFGAGGAGSFGALQYIKQQGGSKSCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKVRRNSSSDSKPPGTPAGLGPVPVPRGLTPTVVKPELYFPQCYAPAFNHQPPVSTAQFPAQANGVSVAGEFKPPTGLPPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00232743; iTF_00230827; iTF_00232127; iTF_00200993; iTF_01268449; iTF_00254531; iTF_00255267; iTF_01199588; iTF_01131013; iTF_01474885; iTF_00252266; iTF_00253770; iTF_00676173; iTF_00253006; iTF_00291728; iTF_00296213; iTF_00297749; iTF_01473365; iTF_00293913; iTF_00295450; iTF_01475642; iTF_00296990; iTF_01198850; iTF_00770550; iTF_00769848; iTF_00880675; iTF_00175909; iTF_00233382; iTF_01122598; iTF_01269224; iTF_01271401; iTF_00828971; iTF_00798753; iTF_00051204; iTF_01509060; iTF_01306693; iTF_00265926; iTF_00629286; iTF_01379465; iTF_01207565; iTF_00397519; iTF_00414512; iTF_00058899; iTF_00721450; iTF_00059627; iTF_01364854; iTF_00058138; iTF_00653043; iTF_00829716; iTF_00343351; iTF_00262840; iTF_01103000; iTF_01299480; iTF_01101529; iTF_01103737; iTF_00266652; iTF_01497660; iTF_00439679; iTF_00048140; iTF_00461036; iTF_00633804; iTF_00966157; iTF_01485389; iTF_01483014; iTF_01484102; iTF_00306447; iTF_01120367; iTF_01476431; iTF_01424528; iTF_01493777; iTF_01493060; iTF_00360371; iTF_01273971; iTF_01273271; iTF_01539763; iTF_01067764; iTF_00218581; iTF_00438261; iTF_01048406; iTF_01099414; iTF_00184087; iTF_00761143; iTF_00088248; iTF_00756856; iTF_01267736; iTF_01423096; iTF_00452729; iTF_00879929; iTF_00881475; iTF_00883245; iTF_00684922; iTF_01232538; iTF_01090151; iTF_01235182; iTF_01233147; iTF_00089019; iTF_00086573; iTF_00132764; iTF_00351345; iTF_00047447; iTF_01005472; iTF_01006492; iTF_00773982; iTF_00222047; iTF_00862079;
90% Identity: iTF_00684322;
80% Identity: iTF_00232743; iTF_00230827; iTF_00232127;