Basic Information

Insect: Trissolcus brochymenae
Gene Symbol: -
Assembly: GCA_030523145.1
Location: JAQQRF010000096.1:76727-101974[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.5e-06 0.00028 21.7 1.7 1 23 313 335 313 335 0.98

2 9 2.4e-08 2.6e-06 28.0 1.6 3 23 343 363 341 363 0.98

3 9 0.00014 0.016 16.1 0.4 1 23 369 391 369 391 0.98

4 9 1e-06 0.00011 22.9 1.5 1 23 397 419 397 419 0.99

5 9 1.8e-05 0.002 19.0 1.7 2 23 533 554 532 554 0.96

6 9 2.3e-09 2.6e-07 31.2 1.6 1 23 560 582 560 582 0.98

7 9 0.00052 0.058 14.4 0.6 3 23 590 610 588 610 0.97

8 9 6.9e-05 0.0077 17.1 1.4 1 23 616 638 616 638 0.99

9 9 0.015 1.7 9.7 0.8 1 23 644 668 644 668 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.5e-06	0.00028	21.7	1.7	1	23	313	335	313	335	0.98
2	9	2.4e-08	2.6e-06	28.0	1.6	3	23	343	363	341	363	0.98
3	9	0.00014	0.016	16.1	0.4	1	23	369	391	369	391	0.98
4	9	1e-06	0.00011	22.9	1.5	1	23	397	419	397	419	0.99
5	9	1.8e-05	0.002	19.0	1.7	2	23	533	554	532	554	0.96
6	9	2.3e-09	2.6e-07	31.2	1.6	1	23	560	582	560	582	0.98
7	9	0.00052	0.058	14.4	0.6	3	23	590	610	588	610	0.97
8	9	6.9e-05	0.0077	17.1	1.4	1	23	616	638	616	638	0.99
9	9	0.015	1.7	9.7	0.8	1	23	644	668	644	668	0.95

Sequence Information

Coding Sequence: ATGGCGCTCTCCGCTCAGAATCAGTCAACCTCCTATGTGAACCTCTACTACTCGATCGTCCAGCGCGCTGCCACACGATACTTCAAGGAGTACTACAATTCCGATAGTGGCGCACCATACGTGCTATACAAGGACAACATGGAGAGGCCGCAGGGTCAGTGGGGCCCTGGGCCGGGAGCTCTCCAGGACGGTGGTCTGTACgtgcagcagcaacaacaacagcaacagcagcagcagccaCAACAGCAGacgcagcagcaacagcagcagcagggTTCGGCGTCATCCGGTAGCCCTCAGCAAACGTGCGGTCCGCCAGTAGAAGGAGGTGAGGGGGGCCAGGCGCCAACACTGGCCTCCCCAGTGCCGTCCCCGTACCCATCGGCCGGTCAGGAGTCACAAGCCCTGACCCCTCCCGGCGATGACATCCAATCAAGCCAACAGACTCCCCAGCAACAGGCACAGCAGGCTCAACAACAGGcacagcagcaacaacaacagcagcagcagcaacagcagcagcagcagcaacagcaacagcagcagcagcagcaggtgcagcagcagcaacaagtACAGCAACAGACGCAGCAGGACCACTCGCCGCAGCAACAGCTGACCCCGCACGAGGTGGAGCGCGGGGACTGCTTTCCGAGCAGCAACGAGCTGCAGCAATACCCGCAGCACTATTTCAAGGAGAGCAGGCCGCACCCGGCTGCGTCAGTGCCCCCACACATGCTGGCCCCGGGTAGCTTCTCGGCGTTGCACTACCTGAAGCAGCCGGGCGTAATGCTGACGTCGCTCGGGCAGGGCGACGGTGGGCCGAATCTGGATGCGCATCAGTACGCGGGCGGGCCGAACATGGGCCCGGGGCTGCCGGACATCGTTCAGCAGAACGGCAAGCCGGGCAAGGGCGCGAACAGCGACCTCCGGCTGTTCAAGTGTCTGACCTGCGGCAAGGACTTCAAGCAGAAGTCGACCTTGCTGCAGCACGAACGGATTCACACGGATAGCCGGCCTTACGGGTGTCCCGAGTGTGGCAAGCGGTTCCGGCAACAGTCCCACCTCACGCAACACCTGCGCATACACGCTAACGAGAAGCCGTACGCGTGTGCCTATTGCGAGCGCACGTTCCGTCAGCGCGCCATTCTCAACCAGCATCTTCGCATCCACTCGGGTGAGAAGCCATACCAATGTCCGGAGTGCGGAAAACACTTTCGTCAGAAGGCGATCCTGAATCAGCACGTCCGCACACACCAAGACGTGAGTCCGCATCTGATATTCAAGAACGGGATGACGCCAACGTTGTGGCCGCAGGACGTGCCTTTTCCCCCTGAGGAGGGCAAGGACGAGGCAAACTCGACATTCGGCGACACGGACACGCAATCCGGAGCATTCAGTCCAGCCCCGGACACAAACTCGACGCAATACCCGGCGTACTTCAAGGACCCAAAGGGGGGCAACCACGCGATCTTCGGAGCCGGTGGGGCCGGCACGTTTGGCGCGATCCAGTACATCAAGCAGCAAGGGGTGAACAAGTCGTGTCTGCCCGACGTGATTCAACACGGGCGCTCCGCGGGCATGCCGCTGTACGTGCGCTGTCCGATCTGCCAGAAGGAGTTCAAGCAGAAGTCGACGCTGCTGCAGCACGGCTGCATCCACATCGAGTCCCGGCCGTACCCCTGTCCGGAGTGCGGCAAGAGGTTTCGACAGCAGTCCCACCTGACGCAGCACCTGCGCATCCACACGAACGAGAAGCCCTACGGTTGCGTCTACTGCGGCCGCAACTTCCGACAGAGGACGATCCTGAACCAGCACCTTCGCATCCACACGGGGGAGAAGCCGTACAAGTGTCAGCAGTGCGGCAAGGACTTCAGGCAGAAGGCGATCCTGGACCAGCACACGCGCACCCACCAGGGCGACCGGCCGTTCTGCTGCCCGATGCCGAACTGCAGGCGGCGCTTCGCGACCGAGCCTGAAGTGAAGAAGCACATCGACAATCACATGAACCCTCACGCTGCGAAGGTGCGCCGCAACTCGAACGGCGAGCTCAAGCACCCGGGCGCGCCGACCAGTCTGGGACCGGTGAGCGTCTCCCGGGGCCTCACCCCGGCCGTGGTCAAGCCCGAGCTCTACTTCCCTCAGTGCTACGCGCCGGCCTTCAACCATCAGCCGCCCGTCTCGTCGTCGCAGTTCGCCGGACAGGCGAACGTCGTCGCCGTCACCGGCGAGTTTAAGCCGCCCACCGGGCTGCCGCCCCAGTGA
Protein Sequence: MALSAQNQSTSYVNLYYSIVQRAATRYFKEYYNSDSGAPYVLYKDNMERPQGQWGPGPGALQDGGLYVQQQQQQQQQQQPQQQTQQQQQQQGSASSGSPQQTCGPPVEGGEGGQAPTLASPVPSPYPSAGQESQALTPPGDDIQSSQQTPQQQAQQAQQQAQQQQQQQQQQQQQQQQQQQQQQQQVQQQQQVQQQTQQDHSPQQQLTPHEVERGDCFPSSNELQQYPQHYFKESRPHPAASVPPHMLAPGSFSALHYLKQPGVMLTSLGQGDGGPNLDAHQYAGGPNMGPGLPDIVQQNGKPGKGANSDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACAYCERTFRQRAILNQHLRIHSGEKPYQCPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGMTPTLWPQDVPFPPEEGKDEANSTFGDTDTQSGAFSPAPDTNSTQYPAYFKDPKGGNHAIFGAGGAGTFGAIQYIKQQGVNKSCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKVRRNSNGELKHPGAPTSLGPVSVSRGLTPAVVKPELYFPQCYAPAFNHQPPVSSSQFAGQANVVAVTGEFKPPTGLPPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00214532;
90% Identity: iTF_01493777;
80% Identity: -