Basic Information

Insect: Pseudomyrmex dendroicus
Gene Symbol: -
Assembly: GCA_014825645.1
Location: QVNZ01003906.1:14514-17578[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.3e-06 0.00027 21.7 1.7 1 23 294 316 294 316 0.98

2 9 2.2e-08 2.6e-06 28.1 1.6 3 23 324 344 322 344 0.98

3 9 0.00017 0.02 15.8 0.4 1 23 350 372 350 372 0.98

4 9 9.5e-07 0.00011 22.9 1.5 1 23 378 400 378 400 0.99

5 9 1.7e-05 0.002 19.0 1.7 2 23 514 535 513 535 0.96

6 9 2.1e-09 2.5e-07 31.3 1.6 1 23 541 563 541 563 0.98

7 9 0.00049 0.057 14.4 0.6 3 23 571 591 569 591 0.97

8 9 6.4e-05 0.0076 17.2 1.4 1 23 597 619 597 619 0.99

9 9 0.014 1.7 9.8 0.8 1 23 625 649 625 649 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.3e-06	0.00027	21.7	1.7	1	23	294	316	294	316	0.98
2	9	2.2e-08	2.6e-06	28.1	1.6	3	23	324	344	322	344	0.98
3	9	0.00017	0.02	15.8	0.4	1	23	350	372	350	372	0.98
4	9	9.5e-07	0.00011	22.9	1.5	1	23	378	400	378	400	0.99
5	9	1.7e-05	0.002	19.0	1.7	2	23	514	535	513	535	0.96
6	9	2.1e-09	2.5e-07	31.3	1.6	1	23	541	563	541	563	0.98
7	9	0.00049	0.057	14.4	0.6	3	23	571	591	569	591	0.97
8	9	6.4e-05	0.0076	17.2	1.4	1	23	597	619	597	619	0.99
9	9	0.014	1.7	9.8	0.8	1	23	625	649	625	649	0.95

Sequence Information

Coding Sequence: ATGAAAAATAATAATACTCTAATAAGTAATAAAATACTATTCGGCTGTAATACCCTAATCGTGAATCTTGTTCTGCATTGTCTGCTTATAGATACTGGCGCGCCCTACGTACTGTACAAAGATAACATGGAGAGACCCCAAGGTCAGTGGGGTCCGGGGCCGGGATCTCTCCAGGATGGCGGATTATATCCGCAACAACAACAACAACAGCCGCAACAACAGGGTTCCTCCTCGTCGGGAAGTCCACAGCAGGCCTGTGGTCCTCCGGTCGAAGGTGGAGAAAGCGGTCCCCCGCCCTCGTTAGCCTCGCCCGTGCCCTCGCCTTATCCGTCGGCGCCTCCCGAGCCTCAGTCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTTCAAGGAGGCTCGGCCGCATCCTTCGCCATCTGTACCGCCCCACATGCTCACTCCAGGCGGCTTTTCCGCGTTGCACTATCTCAAGCAACCCGGAGTGATGCTGACGTCTCTCGGCCAGGGTGACGGTGGACCTAGTCTGGATGCGCATCAGTACGCTAGCCCGGGGGCGCCGAACATGGCGACTGGGCTGCCTGACATTGTGCAACAGAGCGGCAAGTCGTCGAAGAGCGGCAACAGCGATCTACGTCTGTTCAAGTGCTTAACTTGCGGCAAAGATTTTAAGCAGAAGTCGACTCTGCTGCAGCACGAGCGGATCCACACGGATAGTCGGCCGTACGGATGTCCGGAGTGTGGCAAGCGGTTCCGGCAACAATCTCATCTCACGCAACATCTACGCATACACGCTAACGAGAAGCCGTACGCTTGCGTGTACTGCGAGCGTACGTTCCGGCAGCGTGCCATCCTCAACCAGCATCTGCGCATCCACTCGGGTGAGAAGCCATACCAATGTCCGGAGTGCGGAAAACACTTCCGTCAGAAGGCGATCCTGAATCAGCACGTCCGCACACACCAAGACGTGAGCCCGCACCTTATCTTCAAGAACGGAATGACGCCCACCCTGTGGCCGCAAGATGTTCCCTTTCCACCCGAGGAGGGTAAGGAGGAGGTGGCATCGACGTTCGGCGACACGGACACGCAATCGGGCGCGTTCAGTCCGGCACCGGACGCCAATTCCATCCAATACCCCGCTTACTTCAAAGACCCGAAAGGCGGTAATCACGCGGTCTTCGGTGGAGGTAGTTCGGGCAGTTTCGGCGCTCTGCAGTACATCAAGCAGCAGAGTGGCACGAAGAGCTGTCTGCCCGACGTGATACAGCACGGCCGCTCGGCCGGTATGCCGTTGTACGTGCGCTGCCCGATTTGCCAGAAGGAGTTCAAGCAGAAGTCTACGTTATTGCAACACGGTTGCATACACATCGAATCGCGACCATACCCGTGCCCGGAGTGCGGCAAGAGGTTCCGACAACAATCCCACCTTACGCAGCACTTGCGCATCCACACAAACGAGAAGCCGTACGGTTGTGTGTACTGCGGTCGCAACTTCCGCCAGCGCACTATCCTCAATCAGCATCTGCGCATCCACACCGGCGAGAAACCGTACAAGTGCCAGCAATGCGGCAAAGACTTCCGTCAGAAGGCGATCCTGGACCAGCACACGCGTACTCACCAGGGCGATCGGCCGTTTTGTTGTCCGATGCCTAACTGCAGACGGCGTTTTGCGACCGAGCCCGAGGTGAAAAAGCACATCGACAACCATATGAACCCGCACGCAGCGAAAGTGCGTCGAAATTCGAGCAGCGACACGAAGCCGCCCGGCACACCCGCGGGTCTGGGTCCAGTGCCAGTTCCGCGGGGCCTCACTCCCACAGTTGTTAAGCCAGAACTGTACTTCCCGCAGTGCTATGCGCCCGCGTTCAACCATCAGCCGCCGGTCTCCACCGCTCAATTTCCCGGCGCTCAGGCGAACGGCGTGTCCGTGAGCGGCGAATTCAAGCCGCCGACCGGCCTGCCGCCGCAGTGA
Protein Sequence: MKNNNTLISNKILFGCNTLIVNLVLHCLLIDTGAPYVLYKDNMERPQGQWGPGPGSLQDGGLYPQQQQQQPQQQGSSSSGSPQQACGPPVEGGESGPPPSLASPVPSPYPSAPPEPQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYFKEARPHPSPSVPPHMLTPGGFSALHYLKQPGVMLTSLGQGDGGPSLDAHQYASPGAPNMATGLPDIVQQSGKSSKSGNSDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYQCPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGMTPTLWPQDVPFPPEEGKEEVASTFGDTDTQSGAFSPAPDANSIQYPAYFKDPKGGNHAVFGGGSSGSFGALQYIKQQSGTKSCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKVRRNSSSDTKPPGTPAGLGPVPVPRGLTPTVVKPELYFPQCYAPAFNHQPPVSTAQFPGAQANGVSVSGEFKPPTGLPPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00214532;
90% Identity: iTF_01269973;
80% Identity: -