Basic Information

Insect: Tromatobia lineatoria
Gene Symbol: -
Assembly: GCA_949699805.1
Location: OX453036.1:7184269-7192185[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.7e-06 0.00035 21.6 1.7 1 23 325 347 325 347 0.98

2 9 2.6e-08 3.4e-06 28.0 1.6 3 23 355 375 353 375 0.98

3 9 0.0002 0.026 15.7 0.4 1 23 381 403 381 403 0.98

4 9 1.1e-06 0.00014 22.8 1.5 1 23 409 431 409 431 0.99

5 9 2e-05 0.0025 18.9 1.7 2 23 558 579 557 579 0.96

6 9 2.5e-09 3.3e-07 31.2 1.6 1 23 585 607 585 607 0.98

7 9 0.00057 0.074 14.3 0.6 3 23 615 635 613 635 0.97

8 9 7.6e-05 0.0098 17.1 1.4 1 23 641 663 641 663 0.99

9 9 0.067 8.6 7.8 0.8 1 23 669 693 669 693 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.7e-06	0.00035	21.6	1.7	1	23	325	347	325	347	0.98
2	9	2.6e-08	3.4e-06	28.0	1.6	3	23	355	375	353	375	0.98
3	9	0.0002	0.026	15.7	0.4	1	23	381	403	381	403	0.98
4	9	1.1e-06	0.00014	22.8	1.5	1	23	409	431	409	431	0.99
5	9	2e-05	0.0025	18.9	1.7	2	23	558	579	557	579	0.96
6	9	2.5e-09	3.3e-07	31.2	1.6	1	23	585	607	585	607	0.98
7	9	0.00057	0.074	14.3	0.6	3	23	615	635	613	635	0.97
8	9	7.6e-05	0.0098	17.1	1.4	1	23	641	663	641	663	0.99
9	9	0.067	8.6	7.8	0.8	1	23	669	693	669	693	0.95

Sequence Information

Coding Sequence: ATGGCTATAAACTTCTCGGCCTCGTTCGCGGCTTGTCTCGCGGCCGGTCTCAAGGTTCCTCGGCAAATCATGTACTGCATCTCACAGGATACGCCTGCGCCATACGTGTTGTACAAGGACAATATGGAGAGGCCCCAGGGCCAATGGGCCCCGGGACCAGGAGCTCTCCAGGATGGTGGACTTTacgcgcagcagcagcagcaacagcagcagcaacaacagcagcaacagcaacagcagcagcagcaacaacaacagcagcaacagcagcagcaacagcaacaacagcaacaacaacagggCTCTTCAGCGTCGGGTAGTCCGCAGCAGGCCTGCGGTCCACCGGTCGAGGGTGGAGAGTCAGGTCCACCACCGACGTTAGCGTCACCAGTACCTTCGCCGTATCCTTCATCGGCGCCGGAACCTCAGTCGTTATCACCGCCAGACGATGACATACAATCGAATCAGTCAACGgcccaacagcagcaacaacagcaacagcagcagcaacaacagcagcaacagcagcaagtccaacagcagcaacaggtCCAGCAACAGCAGacgcaacaacagcaacagcagcaacagcagcagcaacaacagcaggcGCAACAGCAAGAACATTCGCCGCAGCAACAATTAACGCCTCATGAGGTTGAACGCAGCGATTGCTTTCCTGGAAGCGGTGATCTTCAGCAATATCCACAGCATTATTTCAAAGAGGCGAGGCCTCATCCCTCGCCTTCGGTTCCACCTCATATGCTCACACCCGGAGGCTTTTCCGCGTTACACTATCTCAAACAACCTGGCGTTATGCTTACGTCCCTCGGACAAGGCGATGGAGGACCCAGCCTCGATGGACATCAATATGGCAGCCCCGGTGGACCAAATATGACTGGCACTGGGCTACCCGATATTGTCCAACAAAATGGCAAGCCATCGAAAGGCGCAAACAGTGATTTACGGCTCTTCAAGTGTCTGACGTGCGGTAaagatttcaaacaaaaatcaacGTTGCTACAACACGAGAGGATTCACACGGACAGTCGCCCGTACGGTTGTCCGGAATGCGGCAAACGATTCAGGCAACAGTCACATCTTACCCAGCATCTACGAATACACGCTAACGAGAAGCCATATGCTTGCGTTTACTGCGAGCGCACCTTTCGTCAACGCGCCATCCTCAATCAGCATCTGCGCATCCACTCGGGTGAGAAGCCATACCAATGTCCGGAGTGCGGAAAACACTTCCGTCAGAAGGCGATCCTGAATCAGCACGTCCGCACACACCAAGACGTGAGTCCACATCTGATATTCAAGAACGGTATGACACCGACTCTGTGGCCGCAGGACGTGCCGTTTCCCCCGGAGGAGGGCAAGGAGGAAGTAGCCTCGACGTTCGGCGACACGGACACGCAGTCCGGTGCTTTCAGTCCGTCGCCCGACGGCAATTCCATCCAGTATCCGGCTTACTTCAAGGATCCGAAAAACGGTAACCACGGGGTTTTCGGCTCGGGAGGTCCAGGCAGTTTCGGAGCACTTCAGTACATAAAACAGCAGCAGGGCGGCGGAGGAGCGGGAGGAGGAGGCGGAGGCGGCGGGGGTGGAAAGTCTTGTCTCCCCGACGTGATTCAGCATGGGCGTTCAGCGGGTATGCCGTTGTACGTGCGTTGTCCAATATGCCAGAAGGAATTCAAGCAGAAAAGTACTCTTCTGCAACACGGTTGTATACACATAGAATCTAGGCCATATCCTTGTCCGGAGTGCGGCAAAAGATTCCGTCAGCAGTCTCATTTAACTCAACATCTTCGTATACACACCAACGAAAAGCCTTATGGCTGCGTTTACTGCGGCAGAAATTTCCGTCAGCGTACAATACTAAATCAGCATCTGCGTATTCACACGGGCGAAAAGCCCTACAAGTGTCAACAGTGCGGCAAGGATTTTCGTCAAAAGGCGATACTCGATCAGCACACGAGAACTCACCAGGGTGACCGGCCATTTTGTTGTCCAATGCCCAATTGCAGGCGGCGATTCGCTACCGATCCCGAGGTCAAAAAACACATCGACAACCACATGAATCCTCACGCTACTAAAGTCCGAAGGAATTCTAGCAGCGAGACGAAACCCCCGGGCACGCCGACGGGACTCGGTCCTGTTCCTGTGCCGCGAGGACTCACGCCGACTGTCGTTAAGCCTGAACTGTACTTTCCACAGTGTTACGCGCCCGCTTTCAATCATCATCCGCCAGTCTCGACGGCCCAATTTCCTACAGTTGGACAGACTAACGGCGTCGCCGTTGCCGGAGAATTCAAGCCACCAACGGGTCTTCCGCCGCAGTGA
Protein Sequence: MAINFSASFAACLAAGLKVPRQIMYCISQDTPAPYVLYKDNMERPQGQWAPGPGALQDGGLYAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGSSASGSPQQACGPPVEGGESGPPPTLASPVPSPYPSSAPEPQSLSPPDDDIQSNQSTAQQQQQQQQQQQQQQQQQQVQQQQQVQQQQTQQQQQQQQQQQQQQAQQQEHSPQQQLTPHEVERSDCFPGSGDLQQYPQHYFKEARPHPSPSVPPHMLTPGGFSALHYLKQPGVMLTSLGQGDGGPSLDGHQYGSPGGPNMTGTGLPDIVQQNGKPSKGANSDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYQCPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGMTPTLWPQDVPFPPEEGKEEVASTFGDTDTQSGAFSPSPDGNSIQYPAYFKDPKNGNHGVFGSGGPGSFGALQYIKQQQGGGGAGGGGGGGGGGKSCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATDPEVKKHIDNHMNPHATKVRRNSSSETKPPGTPTGLGPVPVPRGLTPTVVKPELYFPQCYAPAFNHHPPVSTAQFPTVGQTNGVAVAGEFKPPTGLPPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00214532;
90% Identity: iTF_00629286;
80% Identity: -