Basic Information

Insect: Trachymyrmex cornetzi
Gene Symbol: -
Assembly: GCA_001594075.1
Location: NW:924103-947030[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.5e-06 0.0001 22.0 1.7 1 23 175 197 175 197 0.98

2 9 1.4e-08 9.6e-07 28.4 1.6 3 23 205 225 203 225 0.98

3 9 0.00011 0.0075 16.1 0.4 1 23 231 253 231 253 0.98

4 9 6e-07 4.1e-05 23.2 1.5 1 23 259 281 259 281 0.99

5 9 1e-05 0.00073 19.3 1.7 2 23 394 415 393 415 0.96

6 9 1.3e-09 9.3e-08 31.6 1.6 1 23 421 443 421 443 0.98

7 9 0.00031 0.021 14.7 0.6 3 23 451 471 449 471 0.97

8 9 4e-05 0.0028 17.5 1.4 1 23 477 499 477 499 0.99

9 9 0.0091 0.63 10.1 0.8 1 23 505 529 505 529 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.5e-06	0.0001	22.0	1.7	1	23	175	197	175	197	0.98
2	9	1.4e-08	9.6e-07	28.4	1.6	3	23	205	225	203	225	0.98
3	9	0.00011	0.0075	16.1	0.4	1	23	231	253	231	253	0.98
4	9	6e-07	4.1e-05	23.2	1.5	1	23	259	281	259	281	0.99
5	9	1e-05	0.00073	19.3	1.7	2	23	394	415	393	415	0.96
6	9	1.3e-09	9.3e-08	31.6	1.6	1	23	421	443	421	443	0.98
7	9	0.00031	0.021	14.7	0.6	3	23	451	471	449	471	0.97
8	9	4e-05	0.0028	17.5	1.4	1	23	477	499	477	499	0.99
9	9	0.0091	0.63	10.1	0.8	1	23	505	529	505	529	0.95

Sequence Information

Coding Sequence: ATGGCGCTCTCGGCGCAGAACCAGTCGACGTCGTACGTGAACTTGTATTACTCGATCGTCCAACGTGCGGCGACGCGCTACTTTAAGGAATATTACAACTCCGATACTGGCGCGCCCTACGTATTGTACAAAGATAACATGGAGAGACCCCAGGGTCAGTGGGGCCCGGGGCCGGGATCTCTCCAGGACGGTGGACTTCCTCACGCAGAGGTGGATCGCAGCGACTGCTTTCCCGGCGCCGGAGAGCTGCAGCAATATCCGcagcattattttaaagaaGCCCGGCCGCACCCCTCACCGTCCGTGCCACCGCATATGCTTACGCCCGGCGGCTTCTCCGCGCTGCACTATCTCAAGCAACCCGGAGTAATGCTGACGTCTCTCGGCCAAGGCGACGGCGGGCCTGGTCTGGACGCGCATCAGTACGCGAGTCCGGGCGCGCCGAACATGGCGACCGGGCTGCCTGACATCGTACAGCAGAGCGGTAAATCCTCCAAGGCCGGTAACAGCGATCTACGTCTGTTCAAGTGCTTGACCTGCGGCAAAGACTTTAAGCAGAAATCGACTCTGCTGCAGCACGAGCGGATCCACACAGACAGCCGGCCGTACGGATGTCCGGAGTGCGGCAAGCGGTTCCGTCAGCAATCCCATCTCACGCAGCATCTGCGCATACATGCTAACGAGAAGCCGTACGCTTGCGTATACTGCGAGCGTACGTTCCGGCAGCGTGCCATCCTCAACCAGCATCTGCGCATCCACTCGGGTGAGAAGCCATACCAATGTCCGGAGTGCGGAAAACACTTCCGTCAGAAGGCGATCCTGAATCAGCACGTCCGCACACACCAAGACGTGAGTCCACACCTCATCTTCAAGAACGGAATGACGCCGACTCTCTGGCCGCAGGACGTTCCCTTTCCGCCTGAAGAGGGTAAGGAAGAAGTGGCATCGACGTTCGGCGACACGGACACGCAGTCGGGCGCGTTCAGTCCGGCGCCGGACGCCAATTCCATCCAGTACCCAGCATACTTCAAAGATCcaaagggcggtaatcacgcgGTATTTGGCGCAGGTGGCTCGGGCAGCTTTGGTGCCTTGCAGTACATCAAGCAGGGTGGCACGAAAAGCTGTCTACCCGACGTGATACAGCATGGCCGCTCGGCCGGCATGCCGTTGTACGTGCGTTGTCCGATTTGTCAAAAAGAGTTCAAGCAAAAGTCCACGTTACTGCAACACGGGTGTATACACATCGAGTCGCGGCCGTATCCTTGTCCGGAATGCGGCAAGCGATTCCGGCAACAGTCCCATCTCACGCAGCATCTGCGCATTCACACGAACGAGAAGCCGTACGGCTGTGTGTATTGTGGACGTAATTTCCGCCAACGCACGATTCTCAATCAGCATCTGCGTATCCATACCGGTGAGAAACCGTACAAGTGCCAGCAGTGTGGCAAGGACTTCCGTCAAAAAGCGATCCTGGACCAGCATACGCGCACTCACCAGGGCGATCGGCCATTCTGTTGTCCGATGCCGAACTGCAGGCGGCGGTTCGCCACCGAGCCCGAGGTGAAGAAACACATCGACAACCACATGAATCCGCATGCGGCGAAAGTGCGCCGGAATTCGAGCGGTGACACGAAACCGCCTGGCACGCCAGCGGGCTTGGGTCCGGTACCCGTGCCTCGCGGCCTCACGCCGACGGTCGTCAAGCCGGAGCTTTACTTCCCGCAGTGTTACGCGCCCGCGTTCAATCATCAGCCGCCAGTCTCCACCGCGCAGTTCCCCGGCGCCCAGGCGAACGGCGTCTCCGTGACCGGCGAATTCAAGCCACCGACCGGTCTGCCGCCACAGTGA
Protein Sequence: MALSAQNQSTSYVNLYYSIVQRAATRYFKEYYNSDTGAPYVLYKDNMERPQGQWGPGPGSLQDGGLPHAEVDRSDCFPGAGELQQYPQHYFKEARPHPSPSVPPHMLTPGGFSALHYLKQPGVMLTSLGQGDGGPGLDAHQYASPGAPNMATGLPDIVQQSGKSSKAGNSDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYQCPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGMTPTLWPQDVPFPPEEGKEEVASTFGDTDTQSGAFSPAPDANSIQYPAYFKDPKGGNHAVFGAGGSGSFGALQYIKQGGTKSCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKVRRNSSGDTKPPGTPAGLGPVPVPRGLTPTVVKPELYFPQCYAPAFNHQPPVSTAQFPGAQANGVSVTGEFKPPTGLPPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00214532;
90% Identity: iTF_00684322;
80% Identity: -