Basic Information

Insect: Calameuta pallipes
Gene Symbol: -
Assembly: GCA_030142375.1
Location: JARQSW010000433.1:1090149-1096680[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3e-06 0.00024 21.6 1.7 1 23 363 385 363 385 0.98

2 9 2.9e-08 2.3e-06 27.9 1.6 3 23 393 413 391 413 0.98

3 9 0.00023 0.018 15.7 0.4 1 23 419 441 419 441 0.98

4 9 1.3e-06 9.8e-05 22.8 1.5 1 23 447 469 447 469 0.99

5 9 2.2e-05 0.0017 18.9 1.7 2 23 583 604 582 604 0.96

6 9 2.8e-09 2.2e-07 31.1 1.6 1 23 610 632 610 632 0.98

7 9 0.00064 0.05 14.3 0.6 3 23 640 660 638 660 0.97

8 9 8.5e-05 0.0067 17.0 1.4 1 23 666 688 666 688 0.99

9 9 0.019 1.5 9.6 0.8 1 23 694 718 694 718 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3e-06	0.00024	21.6	1.7	1	23	363	385	363	385	0.98
2	9	2.9e-08	2.3e-06	27.9	1.6	3	23	393	413	391	413	0.98
3	9	0.00023	0.018	15.7	0.4	1	23	419	441	419	441	0.98
4	9	1.3e-06	9.8e-05	22.8	1.5	1	23	447	469	447	469	0.99
5	9	2.2e-05	0.0017	18.9	1.7	2	23	583	604	582	604	0.96
6	9	2.8e-09	2.2e-07	31.1	1.6	1	23	610	632	610	632	0.98
7	9	0.00064	0.05	14.3	0.6	3	23	640	660	638	660	0.97
8	9	8.5e-05	0.0067	17.0	1.4	1	23	666	688	666	688	0.99
9	9	0.019	1.5	9.6	0.8	1	23	694	718	694	718	0.95

Sequence Information

Coding Sequence: ATGGCTATAAACTTCTCGGCCTCGTTTGCGGCTTGCCTCGCGGCCGGGCTCAAGGTGCCCCGCCAAATCATGTACTGCATCTCACAGGGTAAGCCTCATACCATAGAATATCATCTCACGATAGTCATTCGCAACGTGGCTCTAATCGCCGCTGGTTGTGATAACAGAACGAAACTGGGAGTAGGGACACAACACCCCTCTGTTAACCGTATGgTCATACCCGGCACCGACCAATCGGTACGCTCCTGTCTGATTGCAGATACTGGCGCGCCATACGTGTTATATAAGGACAATATGGAGAGACCCCAGGGTCAGTGGGGCCCGGGGCCGGGATCTCTCCAGGACGGTGGACTGTACgcccagcagcagcagcagcagcagcagcaacaacagcagcagcagcagcaacagcagcagcagcagcagggtTCCTCCTCGTCGGGTAGTCCGCAGCAGGCCTGCGGTCCTCCGGTCGAAGGAGAGAGCGGTCCTCCGCCCTCACTAGCATCACCCGTACCTTCACCGTATCCTTCGGCACCTCCCGAGTCTCAGGCCCTAACTCCACCCGACGACGACATTCAGTCGAGTCAACCCACACCTCAGCAGCAACAGGtccagcaacagcaacagcaacaacagcagcagcaacaacagcaacagcagcagcaacagcagcaagtacagcagcagcagcagcaacaacagcagcagcagcaacagcaacagcagcaacagcaggaCCACTCGCCCCAGCAACAATTGACGCCGCACGAGGTGGACCGCGGAGAGTGCTTTCCGGGAAGTGGCGAGCTCCAGCAATATCCTCAGCATTACTTCAAAGAGGCTAGGCCGCATCCCTCACCATCCGTGCCTCCTCACATGCTCACTCCCGGGGGCTTCTCCGCCTTGCACTACCTGAAGCAGCCCGGAGTTATGCTCACGTCCCTCGGTCAGGGTGATGGGGGACCCAGTCTCGACGCTCACCAGTACGCGAGTCCGGGGGCGCCGAATATGGCTACGGGCCTGCCCGACATTGTACAGCAGAACGGGAAGCCCGGCAAGGGCGCCAATAGCGACCTGCGGCTCTTCAAGTGCTTGACGTGCGGAAAAGATTTTAAGCAAAAGTCAACTTTGCTACAACACGAGAGGATCCATACGGACAGTCGGCCGTACGGGTGTCCAGAGTGCGGCAAGCGGTTCAGGCAACAGTCGCATCTGACGCAGCACCTGCGCATTCACGCGAACGAGAAGCCCTATGCTTGCGTGTACTGCGAGCGCACCTTCCGTCAACGCGCCATCCTCAACCAGCATCTGCGCATCCACTCGGGTGAGAAGCCATACCAATGTCCGGAGTGCGGAAAACACTTCCGTCAGAAGGCGATCCTGAATCAGCACGTCCGCACACACCAAGACGTGAGTCCGCACCTGATCTTCAAGAACGGGATGACGCCAACCCTCTGGCCCCAGGACGTGCCATTTCCGCCGgaagaaggaaaggaggaaGTGGCCTCGACCTTCGGCGATACGGATACGCAATCCGGTGCATTCAGTCCTGCTCCGGATGCGAATTCCATCCAGTACCCGGCCTACTTCAAGGACCCAAAGGGTGGAAGTCACGCGGTCTTCGGTGCAAGCGCATCCGGTAGCTTCGGTGCTCTTCAGTACATAAAGCAGCAAGGTGCCAGCAAGGGCTGCCTACCTGACGTGATACAGCACGGTCGTTCCGCGGGGATGCCCCTCTACGTTCGCTGTCCGATCTGCCAAAAAGAGTTCAAGCAAAAGTCCACCCTGCTCCAGCATGGCTGCATACACATCGAATCGAGGCCGTACCCTTGTCCGGAATGCGGCAAGAGATTCCGTCAGCAGTCGCACCTGACCCAGCACCTGCGCATACACACGAACGAGAAACCGTACGGTTGCGTCTACTGCGGGCGCAATTTTCGTCAGAGGACCATACTGAATCAGCACCTGCGCATTCACACCGGCGAGAAGCCCTACAAGTGTCAGCAGTGCGGCAAGGACTTCCGTCAGAAGGCCATTCTCGATCAGCACACTCGCACCCACCAGGGCGATCGGCCCTTCTGCTGTCCAATGCCAAACTGTCGGCGACGGTTCGCGACCGAACCGGAAGTCAAGAAGCACATCGACAACCACATGAACCCCCACGCGGCGAAGGTGCGTCGCAATTCGAGCGGCGATACCAAACCTCCCAGCACGCCTTCCGGTCTGGGACCGGTACCGGTACCGCGTGGACTCACGCCGACGGTCGTCAAGCCGGAGCTATACTTTCCGCAGTGTTACGCGCCAGCCTTTAATCATCAGCCGCCCGTCTCCACGGCTCAGTTCCCAGGACAGGCGAATGGCGTAGCCGTCGCGGCTGAATTCAAGCCACCCACGGGGCTACCACCGCAGTGA
Protein Sequence: MAINFSASFAACLAAGLKVPRQIMYCISQGKPHTIEYHLTIVIRNVALIAAGCDNRTKLGVGTQHPSVNRMVIPGTDQSVRSCLIADTGAPYVLYKDNMERPQGQWGPGPGSLQDGGLYAQQQQQQQQQQQQQQQQQQQQQQGSSSSGSPQQACGPPVEGESGPPPSLASPVPSPYPSAPPESQALTPPDDDIQSSQPTPQQQQVQQQQQQQQQQQQQQQQQQQQQVQQQQQQQQQQQQQQQQQQQDHSPQQQLTPHEVDRGECFPGSGELQQYPQHYFKEARPHPSPSVPPHMLTPGGFSALHYLKQPGVMLTSLGQGDGGPSLDAHQYASPGAPNMATGLPDIVQQNGKPGKGANSDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYQCPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGMTPTLWPQDVPFPPEEGKEEVASTFGDTDTQSGAFSPAPDANSIQYPAYFKDPKGGSHAVFGASASGSFGALQYIKQQGASKGCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKVRRNSSGDTKPPSTPSGLGPVPVPRGLTPTVVKPELYFPQCYAPAFNHQPPVSTAQFPGQANGVAVAAEFKPPTGLPPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00214532;
90% Identity: iTF_00684322;
80% Identity: -