Basic Information

Insect: Leptopilina syphax
Gene Symbol: -
Assembly: GCA_032872505.1
Location: CM065471.1:36086269-36091233[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.3e-06 0.00045 21.8 1.7 1 23 245 267 245 267 0.98

2 9 2.2e-08 4.3e-06 28.2 1.6 3 23 275 295 273 295 0.98

3 9 0.00013 0.026 16.3 0.4 1 23 301 323 301 323 0.98

4 9 9.4e-07 0.00018 23.1 1.5 1 23 329 351 329 351 0.99

5 9 1.7e-05 0.0032 19.1 1.7 2 23 465 486 464 486 0.96

6 9 2.1e-09 4.1e-07 31.4 1.6 1 23 492 514 492 514 0.98

7 9 0.00048 0.094 14.5 0.6 3 23 522 542 520 542 0.97

8 9 6.4e-05 0.012 17.3 1.4 1 23 548 570 548 570 0.99

9 9 0.014 2.8 9.9 0.8 1 23 576 600 576 600 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.3e-06	0.00045	21.8	1.7	1	23	245	267	245	267	0.98
2	9	2.2e-08	4.3e-06	28.2	1.6	3	23	275	295	273	295	0.98
3	9	0.00013	0.026	16.3	0.4	1	23	301	323	301	323	0.98
4	9	9.4e-07	0.00018	23.1	1.5	1	23	329	351	329	351	0.99
5	9	1.7e-05	0.0032	19.1	1.7	2	23	465	486	464	486	0.96
6	9	2.1e-09	4.1e-07	31.4	1.6	1	23	492	514	492	514	0.98
7	9	0.00048	0.094	14.5	0.6	3	23	522	542	520	542	0.97
8	9	6.4e-05	0.012	17.3	1.4	1	23	548	570	548	570	0.99
9	9	0.014	2.8	9.9	0.8	1	23	576	600	576	600	0.95

Sequence Information

Coding Sequence: ATGGAGAGACCCCAGGGCCAATGGGGACCTGGGCCGGGATCTCTCCAAGATAGTGGTCTTTATCCCCAGCAACAGCCACAACAACAAGGTTCCTCTTCGTCTGGTAGTCCACAGCAGGCCTGTGGTCCTCCAGTTGAAGGTGAGAGTGGCCCACCACCATCTCTTGCATCGCCTGTTCCTTCGCCGTACCCTTCGGCGCCACCTGAGCCACAAACCATCACGCCATCCGATGAAGATATCCAATCCGGTCAGCAAACATCTcaacaacagcagcagcagcaacaacaacaacagcaagCTCAACAACAGGTacaacagcagcagcaacaacagcagcagcaacagcaacaacaacagGTTCAGCAGCAGCAACCACAAACTCAGGATCATTCACCTCAACAGCAGATAACGGCACACGAAGTCGATCGCACCGATTGTTTCCCTGGTACAGGAGAATTGCAACAATATCCACAGCattatttcaaagaaacaaGGCCACATCCCTCACCATCCGTACCACCGCACATGTTAACACCCGGTGGTTTTTCGGCACTACATTATCTAAAGCAACCAGGCGTTATGCTCACATCATTAGGACAAGGCGACGGTGGGCCCGGTCTCGATCCACATCAATACGCAAGTCCAGGCGCACCAAATATGGGCACAGGTCTACCAGACATTGTTCAACAAAATGGCAAATCTGGCAAGGGTGCAAATAGCGATTTACGtctatttaaatgtttaacatGTGGCAAggattttaaacaaaaatcaacTCTATTGCAACACGAAAGAATTCACACGGATAGTCGGCCGTATGGATGTCCTGAATGTGGAAAACGATTTCGTCAACAGTCCCATCTAACTCAACATCTACGCATACACGCTAATGAGAAGCCATACGCGTGTGCATATTGCGAGCGTACATTTCGACAACGCGCCATCCTCAATCAGCATCTCCGCATCCACTCGGGTGAGAAGCCATACCAATGTCCGGAGTGCGGAAAACACTTCCGTCAGAAGGCGATCCTGAATCAGCACGTCCGCACACACCAAGACGTGAGTCCACATCTTATCTTCAAAAACGGAATGACACCGACATTATGGCCACAGGACGTTCCATTTCCACCAGAAGAAGGCAAGGAGGAAGTAGCATCAACATTTGGCGATAATGATACGCAATCGGGTGCATTTAGTCCAGCGCCTGATGCAAATTCAACACAATATCCAGCATATTTCAAGGATCCAAAAGGTGGTAATCATGCTGTTTTTGGTGCCGGTGGTGCTGGTAGTTTTGGTGCTCTTCAATATATCAAACAACAAAGCGGTGGAAAGGGTTGTTTACCGGATGTAATACAACATGGACGATCAGCGGGTATGCCATTATATGTTCGCTGTCCAATTTGTCAAAaggaatttaaacaaaaatcaacTCTTCTACAGCATGGTTGTATACACATCGAATCAAGACCCTATCCATGTCCAGAATGTGGCAAAAGATTTAGACAACAATCGCATTTAACTCAACATTTACGTATTCATACTAATGAAAAGCCTTACGGTTGCGTGTACTGTGGTAGAAATTTCAGGCAACGAACCATTCTCAATCAACATTTACGTATTCATACCGGTGAGAAACCATACAAGTGTCAACAGTGCGGGAAGGACTTTAGGCAAAAGGCAATATTGGATCAACATACGCGAACACATCAAGGCGATCGTCCATTTTGTTGTCCAATGCCAAATTGTAGACGACGATTTGCGACAGAGCCTGAAGTGAAAAAACATATAGATAATCATATGAATCCTCATGCATCGAAAGTTAGGAGGAATTCAACTGGTGACACTAAATTACCATCAGGTGTTCCAAGTGGATTGGGTCCTGTATCAGTGTCACGTGGTTTAACGCCGGCTGTTGTTAAACCCGAACTCTATTTCCCTCAGTGTTATGCACCGTCATTTAATCATCAGCCACCCGTCTCAACGGCCCAATTTCCCGGGCAGACCAATGTTGTCGCCGTTTCTGGTGAATTTAAACCTCCAACGGGGCTGCCGCCACAGTGA
Protein Sequence: MERPQGQWGPGPGSLQDSGLYPQQQPQQQGSSSSGSPQQACGPPVEGESGPPPSLASPVPSPYPSAPPEPQTITPSDEDIQSGQQTSQQQQQQQQQQQQAQQQVQQQQQQQQQQQQQQQVQQQQPQTQDHSPQQQITAHEVDRTDCFPGTGELQQYPQHYFKETRPHPSPSVPPHMLTPGGFSALHYLKQPGVMLTSLGQGDGGPGLDPHQYASPGAPNMGTGLPDIVQQNGKSGKGANSDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACAYCERTFRQRAILNQHLRIHSGEKPYQCPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGMTPTLWPQDVPFPPEEGKEEVASTFGDNDTQSGAFSPAPDANSTQYPAYFKDPKGGNHAVFGAGGAGSFGALQYIKQQSGGKGCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHASKVRRNSTGDTKLPSGVPSGLGPVSVSRGLTPAVVKPELYFPQCYAPSFNHQPPVSTAQFPGQTNVVAVSGEFKPPTGLPPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00214532;
90% Identity: iTF_00684322;
80% Identity: -