Basic Information

Insect: Harpegnathos saltator
Gene Symbol: -
Assembly: GCA_003227715.1
Location: NW:209824-232465[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2e-06 0.00013 21.7 1.7 1 23 308 330 308 330 0.98

2 9 1.9e-08 1.2e-06 28.0 1.6 3 23 338 358 336 358 0.98

3 9 0.00015 0.0094 15.8 0.4 1 23 364 386 364 386 0.98

4 9 8.2e-07 5.2e-05 22.9 1.5 1 23 392 414 392 414 0.99

5 9 1.4e-05 0.00092 19.0 1.7 2 23 528 549 527 549 0.96

6 9 1.9e-09 1.2e-07 31.2 1.6 1 23 555 577 555 577 0.98

7 9 0.00052 0.033 14.1 0.8 3 23 585 605 583 605 0.97

8 9 5.6e-05 0.0035 17.1 1.4 1 23 611 633 611 633 0.99

9 9 0.012 0.8 9.7 0.8 1 23 639 663 639 663 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2e-06	0.00013	21.7	1.7	1	23	308	330	308	330	0.98
2	9	1.9e-08	1.2e-06	28.0	1.6	3	23	338	358	336	358	0.98
3	9	0.00015	0.0094	15.8	0.4	1	23	364	386	364	386	0.98
4	9	8.2e-07	5.2e-05	22.9	1.5	1	23	392	414	392	414	0.99
5	9	1.4e-05	0.00092	19.0	1.7	2	23	528	549	527	549	0.96
6	9	1.9e-09	1.2e-07	31.2	1.6	1	23	555	577	555	577	0.98
7	9	0.00052	0.033	14.1	0.8	3	23	585	605	583	605	0.97
8	9	5.6e-05	0.0035	17.1	1.4	1	23	611	633	611	633	0.99
9	9	0.012	0.8	9.7	0.8	1	23	639	663	639	663	0.95

Sequence Information

Coding Sequence: ATGGCGCTCTCGGCGCAGAACCAGTCGACGTCGTACGTGAACTTGTATTACTCGATCGTccagcgcgcggcgacgcgctaCTTTAAGGAATATTACAACTCCGATACTGGCGCGCCCTACGTACTGTACAAAGATAACATGGAGAGACCCCAGGGTCAGTGGGGCCCAGGGCCGGGATCTCTCCAGGACGGTGGACTGTacccgcagcagcagcaacagcagcagcaacagggTTCGACCTCGTCGGGAAGCCCGCAGCAGGCCTGTGGACCTCCGGTCGAGGGTGAAAACGGTCCCCCGCCCTCGTTAGCCTCGCCCGTGCCCTCACCGTATCCCTCGGCGCCTCCCGAGCCTCAGTCCTTGACTCCACCCGATGATGACATACAGTCGAGTCAGACCACGtcccagcagcagcagcagcagcagcagcagcagcagcagcagcaacaacagcagcagcagcagcagcaacagcaaacGCAGCAGCAGGTCCAGCAGCAGCAAGtccaacagcagcagcagcagcagcagcagcagcaacagcagcagcagcagcaacagacGCAACAGCAAGACCACTCGCCGCAGCAACAACTGACACCCCACGAGGTGGACCGCAGCGACTGCTTCCCCGGGGCCGGTGAGCTGCAACAGTACCCGCAGCACTACTTCAAGGAGGCCAGGCCGCACCCCTCGCCGTCCGTGCCGCCGCACATGCTCACCCCCGGCGGCTTCTCCGCGCTGCACTATCTCAAGCAACccggcgtgatgctgacgtcCCTCGGCCAAGGGGACGGCGGGCCCGGCCTGGACGCGCACCAGTACGCGAGCCCGGGCGCGCCGAACCTGGCGACCGGGCTGCCCGACATCGTGCAGCAGAGCGGCAAGTCCTCCAAGTCCGGCAACAGCGACCTGCGTCTGTTCAAGTGCTTGACGTGCGGCAAAGATTTTAAGCAGAAGTCGACTCTGCTGCAGCACGAGCGGATCCACACGGACAGCCGGCCGTACGGGTGTCCGGAGTGCGGCAAGCGGTTCCGACAACAATCGCATCTGACGCAGCACCTGCGCATACACGCTAACGAGAAGCCGTACGCTTGCGTGTACTGCGAGCGTACGTTCCGGCAGCGTGCCATCCTCAACCAGCATCTGCGCATCCACTCGGGTGAGAAGCCATACCAATGTCCGGAGTGCGGAAAACACTTCCGTCAGAAGGCGATCCTGAATCAGCACGTCCGCACACACCAAGACGTGAGCCCGCACCTCATCTTCAAGAATGGGATGACGCCGACGCTCTGGCCGCAGGACGTGCCGTTCCCTCCCGAGGAGGGTAAGGAGGAGGTGGCGTCGACCTTCGGCGACACGGACACGCAGTCGGGCGCGTTCAGCCCGGCGCCGGACGCCAACTCCATGCAGTACCCGGCTTACTTCAAGGACCCGAAGGGCGGCAGTCACGCGGTCTTCGGCGCGGCCGGCACCGGCAGCTTCGGCGCGCTGCAGTACATCAAGCAGCAAGGCGGCACGAAGAGCTGCCTGCCGGACGTCATACAGCACGGCCGCTCGGCCGGCATGCCGCTCTACGTGCGCTGCCCGATCTGCCAGAAGGAGTTCAAGCAGAAGTCGACGCTGCTCCAGCACGGCTGCATACACATCGAGTCCCGTCCGTATCCGTGTCCGGAGTGCGGCAAGAGATTTCGCCAGCAGTCGCACCTCACGCAGCACCTGCGCATCCACACGAACGAGAAGCCGTACGGCTGCATGTACTGCGGCCGCAACTTCCGCCAGCGCACGATCCTCAATCAGCATCTGCGCATCCACACCGGCGAGAAGCCGTACAAGTGTCAGCAGTGCGGCAAGGACTTCCGTCAGAAGGCGATCCTGGACCAGCACACGCGCACCCACCAGGGCGACCGGCCGTTCTGCTGCCCGATGCCCAACTGCAGGCGGCGCTTCGCCACCGAGCCCGAGGTGAAGAAGCACATCGACAACCACATGAACCCGCACGCGGCCAAGGTGCGCCGGAACTCGAGCGGCGGCGCCGCCGGCGACAGCAAGCCGCCCGGCACGCCGGTCAGTTTAGGCCCGGTCACGGTGCCGCGCGGCCTCACGCCCACAGTGGTGAAGCCGGAGCTCTACTTCCCGCAGTGTTACGCGCCCGCGTTCAACCATCAGCCGCCGGTGTCGAGCGCGCAGTTCCCCGGCCAGGCGAACGGCGTGTCCGTCACCGGCGAGTTCAAGCCGCCGACCGGCCTGCCGCCGCAGTGA
Protein Sequence: MALSAQNQSTSYVNLYYSIVQRAATRYFKEYYNSDTGAPYVLYKDNMERPQGQWGPGPGSLQDGGLYPQQQQQQQQQGSTSSGSPQQACGPPVEGENGPPPSLASPVPSPYPSAPPEPQSLTPPDDDIQSSQTTSQQQQQQQQQQQQQQQQQQQQQQQQTQQQVQQQQVQQQQQQQQQQQQQQQQQQTQQQDHSPQQQLTPHEVDRSDCFPGAGELQQYPQHYFKEARPHPSPSVPPHMLTPGGFSALHYLKQPGVMLTSLGQGDGGPGLDAHQYASPGAPNLATGLPDIVQQSGKSSKSGNSDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYQCPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGMTPTLWPQDVPFPPEEGKEEVASTFGDTDTQSGAFSPAPDANSMQYPAYFKDPKGGSHAVFGAAGTGSFGALQYIKQQGGTKSCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCMYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKVRRNSSGGAAGDSKPPGTPVSLGPVTVPRGLTPTVVKPELYFPQCYAPAFNHQPPVSSAQFPGQANGVSVTGEFKPPTGLPPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00214532;
90% Identity: iTF_00684322;
80% Identity: -