Abis011297.2
Basic Information
- Insect
- Argynnis bischoffii
- Gene Symbol
- -
- Assembly
- GCA_033884665.1
- Location
- CM066619.1:14784015-14796307[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-11 1.1e-08 35.2 0.0 4 39 168 204 165 208 0.89 2 4 3.4e-11 2.3e-08 34.3 0.2 2 39 220 257 219 260 0.92 3 4 6.6e-16 4.4e-13 49.4 0.1 2 45 275 319 274 319 0.96 4 4 2e-17 1.3e-14 54.3 0.0 1 38 326 364 326 368 0.94
Sequence Information
- Coding Sequence
- atgaCCGGGACTGAAACATTTCTAGTGAAATGCGAACCGCTATCCGATGACGAAGAAACAAGTTCGCAATTtgcaaaaaactattttaatacgCTTGCGTCACCAGAGTATCCCATCAAATTCGAACGAATTTCGCAAGCCGATGAAAATGTGTCGTCGAATCTACTACACCATTTGCAGCATGGATTGGAGGAGCTCGCACCCGCACCGGCCGGCCCCGCCGCCACGCCGGTGCGCGAGCAGCTGTCTGCGCCCTACGAGACCTCGCTCGCTACCCTCGAGCCTGCACTCGATCATGATGTGgGAACATCGCTCATTAGTAGGCACATGGAAATGATGAACGAAGTTGCAGACTCTTCGGAGTTCGTGCCATTAATGATCAAAGATGAGCCAAATTCTGAAGGTGAGCAACATCACTTAAGCGGTGACGACACGAGCGACTCAAACGGTCCATCACAAGAAACATTCAGTCGATCAAGTCCCAAAAGTTGGACCCAACAAGATATGGATAAAGCTTTGGAGGCTCTGAGGAAACATAACATGAGTCTTACTAAGGCATCAGCAACTTATGGTATCCCATCAACAACTCTATGGCAGCGGGCGCATAGACTGGGCATCGACACACCGAAGAAGGAAGGCGCGTCGAAGTCCTGGAGTGAAGCCGACCTCAAGGGAGCCCTGCACGCGCTCCGCGCCGGGGCCATATCCGCTAACAAAGCTAGCAAGGCTTATGGTATCCCGAGCAGCACCCTGTACAAGATAGCGCGGCGCGAGGGCATCCGCCTCGCCGCGCCCTTCAACGCGGCGCCGACCGCGTGGCGCCGCGCCGACCTGGAGCGCGCGCTGGCCGCCATCCGCGCCGGCGCCGTGTCCGTGCAGCGCGCCGCGCACCAGTTCGGCATCCCCACCGgAACCCTTTATGGTAGGTGTAAGCGGGAAGGTATAGAGCTGTCTCGCTCGAACCCCACGCCGTGGTCTGAAGACGCCATGGAGGAAGCCCTGGAAGCTGTCAGAATTGGGCAAATGTCTATAAACCAGGCGGCGATACATTACAATCTGCCGTACTCATCTCTGTACGGTCGGTTTAAGAGGTGCAAGTTTCAGCCAGTACAAAGCCAGCCGCCGACGCAGGaggcgccgcccgcgcccgcgcccgccgcctaCGCGTACTACGCGCCGCACGCGCACTACGCCTGCGATGTCACCAGCTGA
- Protein Sequence
- MTGTETFLVKCEPLSDDEETSSQFAKNYFNTLASPEYPIKFERISQADENVSSNLLHHLQHGLEELAPAPAGPAATPVREQLSAPYETSLATLEPALDHDVGTSLISRHMEMMNEVADSSEFVPLMIKDEPNSEGEQHHLSGDDTSDSNGPSQETFSRSSPKSWTQQDMDKALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLKGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALAAIRAGAVSVQRAAHQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKFQPVQSQPPTQEAPPAPAPAAYAYYAPHAHYACDVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00722959; iTF_00247098; iTF_00247966; iTF_00213344; iTF_00782562; iTF_00775185; iTF_00896693; iTF_00780186; iTF_01181818; iTF_00777329; iTF_00457167; iTF_00780958; iTF_00621145; iTF_00774429;
- 90% Identity
- iTF_00213344;
- 80% Identity
- -