Lcam010326.1
Basic Information
- Insect
- Limenitis camilla
- Gene Symbol
- -
- Assembly
- GCA_905147385.1
- Location
- LR990237.1:14488308-14505845[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.5e-11 2.2e-08 34.3 0.0 4 39 139 175 136 179 0.89 2 4 4.8e-11 2.3e-08 34.3 0.2 2 39 191 228 190 231 0.92 3 4 3.6e-15 1.8e-12 47.5 0.0 2 45 246 290 245 290 0.97 4 4 5e-18 2.5e-15 56.6 0.0 1 38 297 335 297 339 0.94
Sequence Information
- Coding Sequence
- ATGACCGCGACGGAATTTAAAGTAAAATGCGAACCTCTGTCGGATGAAGAAGAAACTAACTCACAATTCGCCAATACTTACTACAATAAGCAAGGTTCTCTGGAAGAGCTGGCGCCGGCTCCGGCGGGTCCGGCAGCGACGCCCGTGTGCGAGCTGCTCCCCGCGCCGCACGAGGCGTCCCTCGCTACTCTGGAGCCCGCTCTCGACCACGATGCGGGATCGTCGCTTATTAGCAGGCACATGGAGATGATGAACGAAGTGGCGGACTCTTCGGAGTTTGTGCCGCTGATGATAAAAGATGAACCCAACTCGGAAGGAGAACAGCAACATCTAAGTGGCGATGATACCAGCGACTCAAACGGGCCAACACAAGAATCTTACAGTCGAGGAAGTCCAAAGAGTTGGACTCAGCAAGACATGGAAAAGGCCTTGGAGGCGCTTAGAAAACATCATATGAGTCTCACTAAGGCATCTGCAACATATGGTATACCATCTACGACTCTGTGGCAGAGGGCGCATAGACTGGGCATAGACACGCCGAAGAAAGAAGGAGCATCCAAGTCCTGGAGTGAAGCTGATCTAAAAGGAGCCCTGCATGCTCTACGAGCGGGGGCTATTTCTGCTAATAAAGCAAGCAAGGCTTACGGTATACCAAGCAGTACTCTGTATAAAATAGCTCGTCGTGAAGGCATCCGTCTCGCTGCGCCATTCAACGCGGCGCCCACCACCTGGAGACGCGACGACCTGGAGCGCGCGCTCTCGGCGATAAGGTGTGGTGCTGCGTCTGTGCAGCGCGCAGCTCAGCAGTTTGGGATACCTACAGGTACTCTCTACGGGAGATGCAAGCGAGAGGGTATAGAACTGTCTCGCTCTAACCCCACGCCGTGGTCGGAGGACGCTATGGAAGAAGCTCTGGAAGCTGTCAGAGTGGGTCAAATGTCAATAAATCAAGCGGCCATACACTACAATTTGCCGTATTCATCTCTATACGGACGCTTCAAGAGATGTAAATTCCAACCGGTGCAGAACCAACCACCGATATTACAGCAGGACCTACCTACGCAACCGGAAACAGAGCCCTACCCGGACCCACACTACCAGCAAATACACGCACACGCACACATGCACACAGACACAGACTTGCACACAGACGCAATATCGTATGACATGGACACCTTCCAATACTCACACATGTATTTTTCACAGTGTGACGTCACCAGCTGA
- Protein Sequence
- MTATEFKVKCEPLSDEEETNSQFANTYYNKQGSLEELAPAPAGPAATPVCELLPAPHEASLATLEPALDHDAGSSLISRHMEMMNEVADSSEFVPLMIKDEPNSEGEQQHLSGDDTSDSNGPTQESYSRGSPKSWTQQDMEKALEALRKHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLKGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWRRDDLERALSAIRCGAASVQRAAQQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKFQPVQNQPPILQQDLPTQPETEPYPDPHYQQIHAHAHMHTDTDLHTDAISYDMDTFQYSHMYFSQCDVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00159746;
- 90% Identity
- -
- 80% Identity
- -