Pdid007333.2
Basic Information
- Insect
- Philaethria dido
- Gene Symbol
- -
- Assembly
- GCA_033558755.1
- Location
- JAKGSA010000317.1:572252-581156[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.7e-12 5e-09 36.1 0.0 4 39 167 203 164 207 0.89 2 4 1.9e-11 2e-08 34.2 0.2 2 39 219 256 218 259 0.92 3 4 1.1e-15 1.2e-12 47.7 0.1 2 45 274 318 273 318 0.96 4 4 1.1e-17 1.2e-14 54.1 0.0 1 38 325 363 325 367 0.94
Sequence Information
- Coding Sequence
- ATGACTGGGACGGAAACATTCCGAGTGAAATGCGAACCGCTGTCCGATGAAGAAGAAAGTTCTCAATTtacaaaaacttattttaataagCTTTCGTCCACTGAGTACGTTCCAATCAAATTGGAGCATATTTCGCATTCAGATGAAAATGTTTCGACGCACCTTCTGCATCATTTGcagCATGGTCTGGAAGAACTCGCTCCCGCGCCCGCCGGCCCCGCGGCAACACCCGTGCGGGAGCAACTATCCGCGCCTTATGAGGCATCGCTAGCTACACTCGAACCCGCTCTAGATCATGATGTGgGAACATCTCTCATTAGCAGACACATGGAAATGATGAACGAAGTGGCGGACTCGTCTGAGTTTGTTCCGTTGATGATCAAAGACGAGCCGAGTTCTGAAGgcgAACAACAACATCTAAGCGGTGATGATACAGATTCCAATGGACCGTCTCAAGAAACCTTCAGTCGCTCCAGTCCCAAGAGCTGGACTCAGCAGGACATGGAGAAAGCTCTAGAAGCATTGAGGAAACACCATATGAGTTTAACTAAGGCATCATCTACGTACGGTATTCCCTCAACAACACTCTGGCAGAGGGCCCACAGATTGGGCATAGACACTCCCAAGAAGGAAGGCGCTTCCAAGTCGTGGAGCGAGGCGGACCTCAAAGGAGCCCTGCACGCGCTGCGAGCGGGCGCCATATCCGCTAATAAAGCGAGTAAAGCGTatgGCATCCCGTCCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGACTGGCGGCGCCCTTCAACGCGGCGCCGACGGCGTGGCGCCGCGCCGACCTGCAGCGCGCGCTCGCCGCCATACGCGCCGGCGACGCGTCCGTGCAGCGCGCCGCGCACCTCTACGGGATACCTACCGGTACCCTGTACGGTAGGTGTAAGCGAGAGGGTATAGAGTTGTCCCGCTCTAACCCCACGCCCTGGTCTGAAGACGCCATGGAAGAAGCGCTCGAGGCTGTCAGaattggTCAAATGTCCATAAATCAAGCGGCTATTCACTACAACTTGCCGTATTCATCATTGTACGGTCGATTCAAGAGATGCAAGTTTCAACCTGTTcagAACCAACCACCGATCACAACCGAGGAACCCCGCGACCCCATCGACCCTAGTGACCCAAACGAGCCCTACCCCCACTATGGGGTCGCAACCCCACAGCCGCACACACAAACGCATCCCCACATGTACCCACACGCGCAAGTCTCATATGAAAACTATCAGTATCAAATGTACTACACGCAGTGTGACGTCACTAGCTGA
- Protein Sequence
- MTGTETFRVKCEPLSDEEESSQFTKTYFNKLSSTEYVPIKLEHISHSDENVSTHLLHHLQHGLEELAPAPAGPAATPVREQLSAPYEASLATLEPALDHDVGTSLISRHMEMMNEVADSSEFVPLMIKDEPSSEGEQQHLSGDDTDSNGPSQETFSRSSPKSWTQQDMEKALEALRKHHMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLKGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLQRALAAIRAGDASVQRAAHLYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKFQPVQNQPPITTEEPRDPIDPSDPNEPYPHYGVATPQPHTQTHPHMYPHAQVSYENYQYQMYYTQCDVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00159746;
- 90% Identity
- iTF_00213344;
- 80% Identity
- -