Bdap011433.1
Basic Information
- Insect
- Brenthis daphne
- Gene Symbol
- -
- Assembly
- GCA_947093115.1
- Location
- OX352483.1:14067918-14081619[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-11 8.9e-09 35.3 0.0 4 39 139 175 136 179 0.89 2 4 4.7e-11 2.7e-08 33.8 0.2 3 39 192 228 190 231 0.91 3 4 2.7e-15 1.5e-12 47.4 0.2 2 45 246 290 245 290 0.96 4 4 1.8e-17 1e-14 54.3 0.0 1 38 297 335 297 339 0.94
Sequence Information
- Coding Sequence
- ATGACCGGGACTGAAACATTTCTAGTGAAATGCGAACCGCTATCCGATGACGAAGAAACAAGTTCGCAATTTGCAAAAAGCTATTTTACTACGCATGGATTGGAGGAGCTCGCGCCCGCGCCAGCCGGCCCCGCCGCCACGCCGGTGCGCGAGCAGCTGTCTGCGCCCTACGAGACCTCGCTCGCTACTCTCGAGCCTGCACTCGACCATGATGTGGGAACATCCCTCATTAGTAGGCACATGGAAATGATGAATGAAGTTGCGGATTCTTCGGAGTTCGTGCCATTGATGATCAAAGATGAGCCCAATTCTGAAGGTGAGCAACATCACTTAAGCGGTGACGACACCAGCGACTCAAACGGACCATCACAAGAAACATTCAGCCGTTCAAGTCCCAAAAGCTGGACCCAACAAGATATGGATAAAGCTTTGGAAGCTCTGAGGAAACATAACATGAGTCTTACTAAGGCATCAGCAACTTATGGCATCCCATCAACAACTCTATGGCAGCGGGCGCACAGACTGGGCATCGACACGCCGAAGAAGGAAGGCGCGTCCAAGTCCTGGAGCGACGCCGACCTCAAGGGCGCCCTGCACGCGCTCCGCGCCGGCGCCATATCCGCTAACAAAGCTAGCAAGGCTTATGGCATCCCGAGCAGCACGCTGTACAAGATAGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCGACGGCGTGGCGCCGCGCCGACCTCGAGCGCGCGCTCGCCGCCATCCGCGCCGGCGCTGCCTCCGTGCAGCGCGCCGCGCACCAGTACGGCATACCCACCGGCACCCTTTACGGTAGGTGTAAGCGGGAAGGTATAGAGCTGTCTCGCTCGAACCCCACGCCGTGGTCTGAAGACGCCATGGAAGAAGCCTTGGAAGCCGTCAGAATAGGCCAAATGTCTATAAACCAGGCGGCGATACATTACAACCTGCCGTACTCATCTCTGTACGGTCGGTTTAAGAGATGCAAGTTTCAACCAGTACAAACATTCCAGAGCCAGCCGCCTGCTCCGGACGCGGCGGCCGCGGCGGCGCTGGTGCCCGCCGCGCCGGCGCCCACCGCGTACGCGTACTGCGCGCCGTGCGTGGAGGCGCGCGCGCACTACGCCTGCGACGTCTCCAGCTGA
- Protein Sequence
- MTGTETFLVKCEPLSDDEETSSQFAKSYFTTHGLEELAPAPAGPAATPVREQLSAPYETSLATLEPALDHDVGTSLISRHMEMMNEVADSSEFVPLMIKDEPNSEGEQHHLSGDDTSDSNGPSQETFSRSSPKSWTQQDMDKALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSDADLKGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALAAIRAGAASVQRAAHQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKFQPVQTFQSQPPAPDAAAAAALVPAAPAPTAYAYCAPCVEARAHYACDVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00159746;
- 90% Identity
- iTF_00722959; iTF_00247966; iTF_00780186; iTF_00782562; iTF_00775185;
- 80% Identity
- -