Hcha006921.1
Basic Information
- Insect
- Heliconius charithonia
- Gene Symbol
- -
- Assembly
- GCA_030704555.1
- Location
- CM060815.1:16461052-16468521[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.3e-11 3.8e-08 33.5 0.0 4 39 138 174 137 178 0.90 2 4 1.3e-11 2.1e-08 34.3 0.2 2 39 190 227 189 230 0.92 3 4 4.3e-17 7e-14 51.8 0.1 2 45 245 289 244 289 0.96 4 4 7.4e-18 1.2e-14 54.2 0.0 1 38 296 334 296 338 0.94
Sequence Information
- Coding Sequence
- ATGACTGGGACGGAAACATTCCGAGTGAAACGCGAGCCACTATCCGACGAGGAAGAGACAAGTTCACAGTTCaccaaaagttattttaataagCACGGGCTGGAGGAGCtggcgcccgcgcccgccggccCCGCCGCCACGCCCGTGCGCGACCAGCTGTGCGCGCCGCGCGACGCCGCGCTTGCCACGCTCGAGCCCGCGTCGGACCACCGCGCGGGGACATCCCTCATTAGTCGGCATATGGAAATGATGAATGAAGTGGCGGACTCGTCGGAGTTCGTACCGCTGATGATCAAAGACgagccgagttctgaaggcgAACAACCACATCTAAGTAGTGATGACACAGACTCAAACGGACCAACACAAGAAACGTTCAGCCGATCGAGTCCTAAGAGCTGGACTCAACTAGACATGGAGAAGGCTCTGGAAGCTTTGAGAAAACATCACATGAGTTTGACTAAGGCATCGGCAACCTACGGTATCCCATCAACTACCCTGTGGCAAAGGGCACACCGGCTCGGTATAGACACTCCCAAAAAGGAAGGGGCTTCGAAGTCGTGGAGCGAAGCGGACTTAAAAGGAGCTCTGCACGCTCTACGAGCCGGTGCCATATCTGCTAATAAAGCTAGCAAGGCTTATGGCATCCCGTCCAGCACGCTGTACAAGATAGCGCGGCGCGAGGGCATCCGCCTGGCCGCGCCGTTCAACGCCGCGCCCACCGCCTGGCGCCGCGCCGACCTCGAGCGCGCGCTGCACGCCATCCGCGCCGGCCACGTGTCCGTGCAGCGCGCCGCGCACCTCTACGGCATACCCACCGGTACTCTATACGGAAGGTGTAAGCGGGAAGGTATAGAGCTGTCCCGCTCTAACCCCACGCCGTGGTCGGAGGACGCCATGGAGGAGGCTCTCGAGGCTGTCAGAATTGGTCAAATGTCGATAAATCAAGCGGCCATTCACTATAATTTGCCATACTCGTCGTTGTATGGGCGATTCAAGAGATGCAAATTTCAACCTGTTCAGaaCCAGCCACCAATCACAACAGACGCTGAGCCCCGTGACGCCTCTGACCCCGTTGACCCCAGCGACCCCCTCGACCCCTACCCCCAGTATGGCGTCGTGAACCCTCACGCGCAGACTCAGGTCACCAATGTGTACCCACACGCGCATGTCTCATATGAAACTTACCCATACGCAATGTATTACACGCAGTGTGACGTCACTAGCTGA
- Protein Sequence
- MTGTETFRVKREPLSDEEETSSQFTKSYFNKHGLEELAPAPAGPAATPVRDQLCAPRDAALATLEPASDHRAGTSLISRHMEMMNEVADSSEFVPLMIKDEPSSEGEQPHLSSDDTDSNGPTQETFSRSSPKSWTQLDMEKALEALRKHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLKGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALHAIRAGHVSVQRAAHLYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKFQPVQNQPPITTDAEPRDASDPVDPSDPLDPYPQYGVVNPHAQTQVTNVYPHAHVSYETYPYAMYYTQCDVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00159746;
- 90% Identity
- iTF_00247098;
- 80% Identity
- -