Fadi021342.1
Basic Information
- Insect
- Fabriciana adippe
- Gene Symbol
- -
- Assembly
- GCA_905404265.1
- Location
- FR989997.1:15218754-15238450[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.5e-11 9.6e-09 35.4 0.0 4 39 139 175 136 179 0.89 2 4 4.9e-11 1.9e-08 34.4 0.2 2 39 191 228 190 231 0.92 3 4 1.1e-14 4.2e-12 46.1 0.1 2 45 246 290 245 290 0.96 4 4 2.8e-17 1.1e-14 54.4 0.0 1 38 297 335 297 339 0.94
Sequence Information
- Coding Sequence
- ATGACCGGGACTGAAACATTTCTAGTGAAATGCGAACCGCTATCCGATGACGAAGAAACAAGTTCGCAATTTGCAAAGAGCTATTTTAATACGCATGGATTGGAGGAGCTCGCGCCCGCGCCGGCCGGCCCCGCCGCCACGCCGGTGCGCGAGCAGTTGCCTGCGCCCTACGAGACCTCGCTCGCTACCCTCGAACCTGCACTCGACCATGATGTGGGAACATCGCTCATCAGTAGGCACATGGAAATGATGAACGAAGTTGCGGACTCTTCGGAGTTCGTGCCATTAATGATCAAAGATGAGCCCAATTCTGAAGGTGAGCAACATCACTTAAGCGGTGACGACACGAGCGACTCAAACGGACCATCACAAGAAACATTCAGTCGTTCGAGTCCCAAAAGCTGGACCCAACAAGATATGGATAAAGCTTTGGAAGCTCTGAGGAAACATAACATGAGTCTTACTAAGGCATCAGCGACTTATGGTATCCCATCAACAACACTATGGCAGCGCGCGCATAGACTGGGCATCGACACGCCGAAGAAGGAAGGCGCGTCGAAGTCCTGGAGTGAAGCCGACCTCAAGGGAGCCCTGCACGCGCTCCGCGCCGGCGCCATATCCGCTAACAAAGCTAGCAAGGCTTATGGTATCCCGAGCAGCACGCTGTACAAGATAGCGCGGCGCGAGGGCATCCGCCTGGCGGCGCCGTTCAACGCGGCGCCGACGGCGTGGCGCCGCGCCGACCTGGAGCGCGCGCTAGCCGCCATCCGCGCCGGCGCCGCGTCCGTGCAGCGCGCCGCGCACCAGTTCGGCATACCCACCGGCACCCTTTACGGTAGGTGTAAGCGGGAAGGTATAGAGCTGTCTCGCTCGAACCCCACGCCGTGGTCTGAAGACGCCATGGAAGAAGCCCTGGAAGCTGTCAGAATTGGGCAAATGTCTATAAACCAGGCGGCGATACATTACAACCTGCCGTACTCATCTCTGTACGGTCGGTTTAAGAGGTGCAAGTTTCAGCCAGTACAAAGCCCGCCGCCGGCGCAGGAGGCGCGCGAGGCGCAGGAGCCGGCGCCGGCGCCCGCCGCCTACGCGCACTACGCGCCGCACGCGCACTACGCCTGCGACGTCACCAGCTGA
- Protein Sequence
- MTGTETFLVKCEPLSDDEETSSQFAKSYFNTHGLEELAPAPAGPAATPVREQLPAPYETSLATLEPALDHDVGTSLISRHMEMMNEVADSSEFVPLMIKDEPNSEGEQHHLSGDDTSDSNGPSQETFSRSSPKSWTQQDMDKALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLKGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALAAIRAGAASVQRAAHQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKFQPVQSPPPAQEAREAQEPAPAPAAYAHYAPHAHYACDVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00159746;
- 90% Identity
- iTF_00247098;
- 80% Identity
- -