Haoe004765.3
Basic Information
- Insect
- Heliconius aoede
- Gene Symbol
- -
- Assembly
- GCA_037355905.1
- Location
- JBAIZZ010000112.1:591242-597224[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.2e-11 3.1e-08 33.3 0.0 4 39 167 203 166 207 0.90 2 4 1.2e-11 1.7e-08 34.2 0.2 2 39 219 256 218 259 0.92 3 4 4.5e-17 6.4e-14 51.5 0.0 2 45 274 318 273 318 0.96 4 4 1.8e-18 2.6e-15 56.0 0.0 1 42 325 367 325 368 0.96
Sequence Information
- Coding Sequence
- ATGACCGGGACGGAAGCGTTCCGAGTGAAATGCGAGCCACTGTCCGATGAAGAAGAGACAAGTTCACAGTTCaccaaaagtttttttaacaagCTTTCAAATGAATACGTACCCATCAAGTTGGAGCACATCTCGCGAGCTGATGAAAATGTTTCATCGAACCTTCTGCACCATTTGCagCATGGGTTGGAGGAGCtcgcgcccgcgcccgccgGCCCCGCCGCCACGCCCGTGCGGGACCAGCTGGCCGCGCCTTACGACACTTCTCTTGCTACTCTCGAGCCAGCGTCGGATCCTCAGGTGGGAACATCTCTCTTTAGTAGGCATATGGAAATGATGAATGAAGTGGCGGACTCCTCGGAGTTCGCACCGCTGATGATCAAAGACGAGCCCAGCTCTGAAGGCGAACAACCACATCTAAGCAGCGATGACGCAGACTCAAACGGACCAACACAAGAAACTTCCAGCCGATCGAGTCCCAAAAGCTGGACTCAACTAGACATGGAGAAGGCTCTGGAAGCTTTGAGAAAACATCACATGAGTTTGACTAAGGCATCAGCAACCTACGGTATCCCATCAACTACCCTGTGGCAAAGGGCACACAGGCTCGGTATAGATACACCCAAAAAGGAAGGGGCTTCGAAGTCGTGGAGCGAAGCGGACTTAAAAGGAGCTCTACACGCTTTACGAGCCGGTGCCATATCTGCTAATAAGGCTAGCAAGGCTTATGGTATACCATCCAGCACTCTGTACAAGATAGCGCGGCGCGAGGGCATCCGTCTGGCCGCGCCGTTTAACGCCGCGCCCACCGCCTGGCGCCGCGCCGACCTCGAGCGCGCGCTGCACGCCATCCGTGCCGGCGACGTGTCCGTGCAGCGCGCGGCGCACCTCTACGGCATACCTACCGGTACTCTATACGGAAGGTGTAAGCGGGAAGGTATAGAGCTGTCCCGCTCTAATCCCACGCCGTGGTCGGAGGACGCCATGGAGGAGGCTCTCGAGGCTGTCAGAATTGGTCAAATGTCGATAAACCAGGCGGCCATTCACTATAATTTGCCATACTCGTCGTTGTATGGTCGATTCAAGAGATGTAAATATCAACCTGTTCAGaaCCAGCCTTCAATCACAACAGACACTGAACTCCGTGACGCCTCCGACCCTGTTGATCCCATTGACACCTACCCACAGTATGGAGTCATGAACCCTCACACGCAAACACAGGTCGCTAATATGTACCCACATGCGCATGTCTCATATGAAAGTTACCCATACGCAATGTATTACACGCAGTGTGATGTCACTAGCTGA
- Protein Sequence
- MTGTEAFRVKCEPLSDEEETSSQFTKSFFNKLSNEYVPIKLEHISRADENVSSNLLHHLQHGLEELAPAPAGPAATPVRDQLAAPYDTSLATLEPASDPQVGTSLFSRHMEMMNEVADSSEFAPLMIKDEPSSEGEQPHLSSDDADSNGPTQETSSRSSPKSWTQLDMEKALEALRKHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLKGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALHAIRAGDVSVQRAAHLYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYQPVQNQPSITTDTELRDASDPVDPIDTYPQYGVMNPHTQTQVANMYPHAHVSYESYPYAMYYTQCDVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00159746;
- 90% Identity
- iTF_00777329; iTF_00780958;
- 80% Identity
- -