Acra013246.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- retn
- Assembly
- GCA_947859365.1
- Location
- OX402062.1:6792700-6801178[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-19 3.3e-16 60.1 0.0 15 89 43 115 34 115 0.93 2 2 7.2 1.8e+04 -3.2 0.0 25 38 243 256 206 257 0.66
Sequence Information
- Coding Sequence
- ATGAATACTTCAGCAAGCATATCTTATAATAGGAAGGACTTTAGGATCTGCTGTCGTGAATGCCCAGTGAGTGATGGTGTTTGTAGCATCTGCAAGCTGCTTCCGGCTATGCTATTGGTTTGCGTAAGTGCAAGCACTCCTATAAACCGGCTGCCGATTATGGCTAAGTCGGTGCTAGATCTGTACGAGCTCTACAACCTGGTGATAGCCCGCGGCGGGCTTGTCGAGGTCATCAACAAAAAGCTATGGCAAGAGATCATCAAGGGGCTGCGGCTGCCGTCCTCTATAACATCCGCTGCTTTCACTCTACGCACACAATACATGAAGTACCTGTACGATTACGAGTGCGAGAAGAAGAATCTGTCGACCCGCAGCGAATTGGACGCCGCCATCGAAGGCAACAAGCGCGAGGGCCGCCGCGCCTCCGGGCAGTACGACGCTCAAGCCGCTCTTGCCATGCCCCCCCTGAACCGCATGCCGGCGTCGCTGGCGCAGCTGTCTCAGCACATGCAGCCTCTCTCGCTCTCGCTGGGCGGCGGCGTGCCGCGTTTGCCGCCTCTGCCGCCGCACGCGCCGCATATTTCGCAGCATGACATCGAGTATAGAGTGCGGGAATACATGAAGATGATACAGCAGCAACGGGAGTTGATGCGTAATGGATCGGAGTCCCCGCCGGGGTCAGGGCCAGCGCCGATGATGTCGCCGCGCGACGCTGCCGCCCTCAGTGCCATCGACGTCTCGCGGCTCACGCTCTGGTCGCTCTACAACAATAACAACAACAGCCCGCAACCGGATCTGGAACCGCAACGCGAGGCGCTGAATCTGAGCGAGAGCCCCAACTCTTCGTTGGGTGCCGGCGGTATAAAGCGCGAGGCTTGCCGTTCGCCCCCTCCCCCCGCCAAGCGCCGTAACTCGCGCCCCGTCTCCCCCCGCGCGCCCTCACCGCGCCCCGCTAGTAACCCTGTACCACCACAACATAACGGTAACGGGGTAAACGGGGCAGCCTTTAAAATTACCACTAGAGGAGATGCGAGCACAGGAGACCAACAGTTAGTCGTATCTATCGAGCTGAATGGCGTCACATACGAAGGCGTCCTATTCCCTTCACAGAACGCCAGCGGGCAGAATGGACACAGGCAAATGGTCTCTTAA
- Protein Sequence
- MNTSASISYNRKDFRICCRECPVSDGVCSICKLLPAMLLVCVSASTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRMPASLAQLSQHMQPLSLSLGGGVPRLPPLPPHAPHISQHDIEYRVREYMKMIQQQRELMRNGSESPPGSGPAPMMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPDLEPQREALNLSESPNSSLGAGGIKREACRSPPPPAKRRNSRPVSPRAPSPRPASNPVPPQHNGNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSQNASGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00156037; iTF_00462155; iTF_00325153; iTF_00341998; iTF_00021119; iTF_01463040; iTF_00289409; iTF_01133505; iTF_00655877; iTF_00660091; iTF_00656925; iTF_00871081; iTF_00409071; iTF_01135535; iTF_01134566; iTF_00659248; iTF_00412305; iTF_01500883; iTF_00411190; iTF_00410061;
- 90% Identity
- iTF_00654018;
- 80% Identity
- -