Phep018270.1
Basic Information
- Insect
- Pandemis heparana
- Gene Symbol
- retn
- Assembly
- GCA_963854515.1
- Location
- OY978023.1:9734985-9744915[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-20 1.6e-16 61.1 0.0 16 89 12 83 8 83 0.95 2 2 6.4 1.7e+04 -3.0 0.0 25 38 211 224 174 225 0.65
Sequence Information
- Coding Sequence
- ATGTGGACCCTAGGACGAACGACTAAACCTGGCAAAGGCACTCCTATAAACCGGCTTCCTATAATGGCTAAGTCGGTGCTGGATCTATACGAGCTCTACAACCTGGTGATCGCCCGCGGCGGTCTTGTCGAGGTCATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGGCTGCGGCTGCCCTCGTCTATTACATCAGCTGCTTTTACTCTGCGCACACAATACATGAAGTACCTGTACGATTACGAGTGCGAGAAGAAGAACCTGTCAACCcgcagcgagctggacgccgccaTCGAGGGCAACAAGCGGGAAGGCCGCCGCGCCTCCGGCCAGTACGACGCCCAAGCCGCTCTAGCCATGCCCCCCCTGAACCGCATGCCGGCGTCGCTGGCGCAGCTGTCTCAGCACATGCAGcccctctctctctcgctcGGGGGCGGCGTGCCGCGcctgccgccgctgccgccgcacgcgccgcaCATATCACAGCACGACATCGAGTACAGAGTGAGGGAGTACATGAAGATGATACAGCAGCAACGGGAGCTGATGCGTAATGGATCGGAATCTCCGCCGGGATCGGGTCCCGCGCCGATGATGTCGCCGCGCGACGCCGCCGCGCTCAGCGCTATCGACGTCTCGCGGCTGACGCTCTGGTCGCtctacaacaacaataacaacagcCCGCAGCCGGACCTCGAGCCCCAGCGCGAGGCGCTGAACCTGAGCGAGAGCCCCAACTCGTCGCTGGGCGCGGGCATCAAGCGCGAGGCCTgccgctcgccgccgccgcccgccaagcgccgcaccccgcgccccgcctcCCCCCGCGCGCCCTCCCCGCGCGCGCCCGGCACCCCCGCGCCGCAGCACAACGGCAACGGGGTTAACGGGGCGGCCTTCAAAATTACCACTAGAGGAGATGCGAGCACAGGAGACCAGCAGTTAGTAGTGTCCATCGAGTTGAACGGCGTCACATACGAAGGCGTCCTATTTCCTTCACAGAACGCCAGCGGGCAAAACGGACACAGGCAAATGGTCTCCTAA
- Protein Sequence
- MWTLGRTTKPGKGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRMPASLAQLSQHMQPLSLSLGGGVPRLPPLPPHAPHISQHDIEYRVREYMKMIQQQRELMRNGSESPPGSGPAPMMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPDLEPQREALNLSESPNSSLGAGIKREACRSPPPPAKRRTPRPASPRAPSPRAPGTPAPQHNGNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSQNASGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00155094;
- 90% Identity
- iTF_00654018;
- 80% Identity
- -