Tabs021516.2
Basic Information
- Insect
- Tuta absoluta
- Gene Symbol
- retn
- Assembly
- GCA_029230345.1
- Location
- CM055297.1:15115957-15129476[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-19 3.9e-16 60.3 0.1 17 89 39 109 35 109 0.95 2 2 4.7 1.7e+04 -2.6 0.0 25 38 241 254 202 255 0.56
Sequence Information
- Coding Sequence
- ATGGCCACGGGTTATGGAAATAGCGCGCGCGGCGCTCCGCTCGGCGCTCAGGCGCATCGAATCGCGCGTTTTCCGCCACAGGGCGGGGAGGCGGTTTGTGGAAATCGTTATTGGGGCACGCCGATAAACCGACTGCCTATAATGGCCAAGTCCGTGTTGGACCTGTACGAGCTGTACAACCTGGTGATTGCTCGAGGTGGACTGGTGGAGGTCATCAACAAAAAGCTCTGGCAGGAGATCATCAAGGGGCTGAGGCTGCCATCGTCCATCACCTCAGCGGCGTTCACGCTACGGACGCAGTACATGAAGTACTTGTACGACTATGAGTGCGAGAAGAAGAACCTGTCGACTCGCAGCGAGCTGGACGCCGCTATTGAGGGCAACAAGCGCGAGGGACGCCGCGCCTCGGGCCAGTACGACGCGCAAGCGGCGTTGGCCATGCCGCCATTGAACCGGGTGCCGGCGTCTCTGGCGCAGCTCTCTCAGCACATGCAGCCGCTGTCTCTTTCCCTCGGAGGGGGGGTGGCGGGGGTGCCCCGTCTGCCGCCATTGCCTCCTCACGCGCCGCACCTCTCCCAGCACGACCTGGAGTACCGAGTCCGGGAGTACATGAAGATGATCCAGCAGCAACGCGAGCTCATGAGGAATGGCTCGGAATCCCCGCCCAGTGCCAACGGCCCCACCCCGATGATGTCTCCACGTGACGCAGCCGCCCTCAGTGCCATCGACGTGTCGCGCCTCACGCTCTGGTCTCtctacaacaacaacaacaacagtccCCAACCAGACCTGGAGCCTCAACGGGAGGCATTAAACCTGAGCGAGAGCCCAAACTCTGGCGTGAGCGTGAAGCGCGAGGCTTGCCGCTCTCCCCCCCCTCCCGCGAAGCGACGCACCCCGCGCCCCGCCAACGGCGTCAATGGAGCTGCGTTCAAGATCACTACTAGAGGAGACGCGAGCACAGGCGACCAACAGCTGGTAGTGTCAATAGAACTCAACGGCGTCACATACGAGGGCGTTCTGTTCCCCTCAAACGCGGGCGGACAAAACGGACACAGGCAAATGGTGTCCTAA
- Protein Sequence
- MATGYGNSARGAPLGAQAHRIARFPPQGGEAVCGNRYWGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGGVAGVPRLPPLPPHAPHLSQHDLEYRVREYMKMIQQQRELMRNGSESPPSANGPTPMMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPDLEPQREALNLSESPNSGVSVKREACRSPPPPAKRRTPRPANGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSNAGGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00155094;
- 90% Identity
- iTF_00177863;
- 80% Identity
- -