Basic Information

Gene Symbol
retn
Assembly
GCA_932294385.1
Location
CAKOAM010000033.1:10472547-10479176[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 8e-17 1.3e-13 51.6 0.1 29 89 4 62 1 62 0.93
2 2 6.2 1e+04 -2.6 0.0 25 38 189 202 151 204 0.62

Sequence Information

Coding Sequence
ATGGCGAAGTCGGTGCTGGACCTGTACGAGCTGTACAACCTGGTGATCGCGCGCGGCGGCCTCGTCGAGGTGATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGGCTGCGGCTGCCGTCGTCCATCACGTCAGCTGCCTTCACTCTGCGCACACAATACATGAAGTACCTATATGACTACGAGTGTGAAAAGAAGAACTTGTCGACGCGGAGCGAGCTGGACGCGGCCATCGAGGGCAATAAGCGCGAGGGCCGCCGCGCCTCCGGCCAGTACGACGCGCAGGCTGCGCTGGCAATGCCCCCCCTGAGCCGGGTGCCGGCGTCGCTCGCGCAGCTCTCGCAGCACATGCAGCCCCTCTCGCTGTCTCTCGGCGGGGTCCCGCGCCTGCCGCCGCTACCGCCGCATGCGCCGCATATATCACAGCACGATATAGAGTACAGGGTGCGCGAGTACATGAAGATGATTCAGACGCAAAGGGAGCTGATGAGGAATGGTTCCGAATCGCCTCCCAGTTCCGGGCCGACCCCGATGATGTCTCCGCGGGACGCCGCCGCGCTCAGCGCCATCGACGTGTCGCGGCTCACGCTGTGGTCGCTCTACAACAACAACAACAACAGCCCGCAGCCCGACCTCGAGCCACAACGAATGTCTTCTGCCAACAGCGAGGCCCTGAACCTGAGCGAGAGCCCCAACTCGTCGCTGACGGGCATCAAGCGCGAGGCGTGTCGCTCCCCGCCGCCCCCCGCCAAGCGCCGCACCCCGCGCCCGCCCTCCCCGCTGGCGCCCGAGCCGCCGCGCGGCCTGCCGCAAGTTAACGGGAACGCCGTCAACGGGGCGGCATTCAAGATCACTACTAGAGGCGACGCCAGTACGGGAGACCAGCAGCTAGTCGTCTCCATCGAGCTGAACGGCGTCACGTACGAGGGCGTCCTCTTCCCCTCGCAGAACGCCAGTGGACAGAACGGCCACAGGCAAATGGTCTCTTAA
Protein Sequence
MAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLSRVPASLAQLSQHMQPLSLSLGGVPRLPPLPPHAPHISQHDIEYRVREYMKMIQTQRELMRNGSESPPSSGPTPMMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPDLEPQRMSSANSEALNLSESPNSSLTGIKREACRSPPPPAKRRTPRPPSPLAPEPPRGLPQVNGNAVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSQNASGQNGHRQMVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00155094;
90% Identity
iTF_00654018;
80% Identity
-