Cros025560.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- retn
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000038.1:5847823-5855322[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-21 2.1e-17 64.2 0.0 10 89 10 87 7 87 0.93 2 2 5.9 1.9e+04 -2.9 0.0 25 38 213 226 175 227 0.62
Sequence Information
- Coding Sequence
- ATGGGAAGAGCGACATCAATCAAAATTGCAAATCTGCTGTTAAGACAGGGCACTCCTATAAACCGGCTGCCGATTATGGCTAAGTCGGTGCTGGATCTATACGAGCTCTACAATCTGGTGATAGCCCGCGGCGGGCTCGTCGAGGTCATCAACAAAAAGCTGTGGCAGGAGATCATCAAGGGGCTGCGACTGCCGTCTTCTATAACATCTGCTGCTTTCACACTGCGCACACAATACATGAAGTACCTATATGACTACGAATGCGAGAAGAAGAACCTGTCGACTCGCAGCGAGTTGGATGCCGCCATCGAAGGCAACAAGCGCGAAGGCCGCCGCGCCTCCGGCCAGTACGACGCGCAAGCCGCTCTTGCCATGCCCCCGCTGAACCGCATGCCGGCGCTGGCGCAGCTGTCGCAGCACATGCAGCCCCTCTCGCTCTCGCTGGGCGGCGTGCCGCGCCTcccgccgctgccgccgcacGCGCCGCATATATCGCAGCATGACATCGAGTACAGAGTGCGCGAGTACATGAAAATGATACAGCAGCAACGGGAGCTGATGCGTAacgGATCGGAGTCCCCGCCGGGGTCCGGGCCCGCGCCGATGATGTCCCCGCGCGACGCCGCCGCCCTCAGCGCCATCGACGTCTCGCGACTCACGCTCTGGTCGCTCtacaacaataacaacaacagCCCCCAGCCAGACCTCGAGCCGCAACGCGAGGCGCTGAACTTGAGTGAGAGCCCCAACTCCTCCCTGGGTGCTGGCGGCATCAAGCGCGAGGCTTGCCGCTCCCCCCCTCCCCCCGCCAAGCGCCGCACCCCGCGCCCCGCCTCCCCCCGTGCGCCTTCCCCGCGCCCCGCCAGTACTCCTGCACCCCCACAACACAATGGCAACGGGGTTAATGGAGCAGCCTTCAAAATTACCACTAGAGgAGATGCGAGCACAGGAGACCAGCAATTAGTCGTATCTATCGAGCTGAATGGCGTGACATACGAAGGCGTTCTATTTCCTTCGCAGAACTCCAGCGGGCAGAACGGACACAGGCAAATGGTCTCTTAA
- Protein Sequence
- MGRATSIKIANLLLRQGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRMPALAQLSQHMQPLSLSLGGVPRLPPLPPHAPHISQHDIEYRVREYMKMIQQQRELMRNGSESPPGSGPAPMMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPDLEPQREALNLSESPNSSLGAGGIKREACRSPPPPAKRRTPRPASPRAPSPRPASTPAPPQHNGNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSQNSSGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00155094;
- 90% Identity
- iTF_00654018;
- 80% Identity
- -