Talt019427.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- retn
- Assembly
- GCA_947859335.1
- Location
- OX401984.1:5417855-5423377[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-19 2.5e-16 60.1 0.0 17 89 3 73 1 73 0.95 2 2 4.8 1.2e+04 -2.9 0.0 25 38 200 213 163 214 0.66
Sequence Information
- Coding Sequence
- ATGATCGGGACGCCAATAAACCGGCTGCCGATAATGGCAAAGTCGGTGCTGGATCTGTACGAGCTGTATAACCTGGTGATCGCGCGCGGCGGACTGGTCGAGGTCATCAACAAGAAGCTTTGGCAGGAGATAATCAAAGGGCTGCGACTACCCTCCTCCATCACCTCCGCTGCTTTCACTCTACGCACACAATACATGAAGTACCTGTACGACTACGAGTGCGAGAAGAAGAACTTGTCAACGCGCAGCGAGCTGGACGCGGCCATCGAGGGCAACAAGCGGGAGGGTCGCCGCGCCTCCGGGCAGTACGACGCGCAAGCCGCGCTCGCCATGCCCCCGCTCAACCGGGTGCCGGCGTCGCTCGCGCAGCTGTCTCAGCACATGCAGCCCCTCTCGCTCTCTCTGGGAGGGGTGCCGCGTCTGCCGCCGCTGCCGCCGCACGCGCCGCACGTTTCGCAACATGACATCGAGTACCGCGTGCGGGAGTATATGAAGATGATACAGCAGCAGCGGGATTTGATGAGGAATGGGTCTGAGTCTCCTCCAGGCTCCGGGCCGACGCCGATGATGTCCCCGCGCGACGCCGCCGCGCTCAGCGCCATCGACGTATCGCGGCTCACGCTCTGGTCACTCTACAACAACAATAACAACAGCCCGCAGCCGGACCTCGAGCCCCAACGCGAGGCGCTGAACCTGAGCGAGAGCCCCAACTCGTCGCTGGGCGGCGGCGGCGTGAAGCGCGAGGCGTGCCGCTCGCCGCCGCCGCCCGCCAAGCGCCGCACGCCGCGCCCGCCCTCGCCCTCGCCCGAGCCGCGCGCGCCCGCGCCGCGCCACCCCGCGCACGGCGGCCCCGGCGCGGCCTTCAAGATCACCACCAGAGGAGACGCGAGCACAGGTGACCAGCAGCTGGTCGTCTCCATCGAGCTGAACGGCGTCACGTACGAGGGCGTCCTCTTCCCCTCGCAGAGCGCGAGCGGGCAGAACGGACACAGACAAATGGTCTCCTAG
- Protein Sequence
- MIGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRVPASLAQLSQHMQPLSLSLGGVPRLPPLPPHAPHVSQHDIEYRVREYMKMIQQQRDLMRNGSESPPGSGPTPMMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPDLEPQREALNLSESPNSSLGGGGVKREACRSPPPPAKRRTPRPPSPSPEPRAPAPRHPAHGGPGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSQSASGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00155094;
- 90% Identity
- iTF_00654018;
- 80% Identity
- -