Pcor017106.1
Basic Information
- Insect
- Pandemis corylana
- Gene Symbol
- retn_1
- Assembly
- GCA_949127965.1
- Location
- OX421867.1:5104379-5110395[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-19 8e-16 58.9 0.0 18 89 18 87 14 87 0.94 2 2 5.9 1.7e+04 -3.1 0.0 25 38 215 228 178 229 0.65
Sequence Information
- Coding Sequence
- ATGGTATATGTAGCATCTGCTAGCTCTTCCGGCAGAGCAATTGGCTTGCGCACTCCTATAAACCGGCTTCCTATAATGGCTAAGTCGGTACTGGATCTATACGAGCTCTACAACCTGGTGATCGCCCGCGGCGGTCTTGTCGAGGTCATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGGCTGCGGCTGCCCTCCTCTATTACATCCGCTGCTTTTACTCTGCGCACACAATACATGAAGTACCTGTACGATTACGAGTGCGAGAAGAAGAACTTGTCAACCCGCAGCGAGCTGGATGCCGCCATCGAAGGCAACAAGCGGGAGGGCCGCCGCGCCTCCGGCCAGTACGACGCCCAAGCCGCTCTAGCCATGCCCCCCCTGAACCGCATGCCGGCGTCGCTGGCGCAGCTGTCTCAGCACATGCAGCCCCTCTCGCTCTCGCTCGGGGGCGGCGTGCCGCGTctgccgccgctgccgccgcacgcgccgcacaTATCACAGCATGACATCGAGTATAGAGTGAGGGAGTACATGAAGATGATACAGCAGCAGCGGGAGCTGATGCGTAATGGATCGGAATCTCCGCCGGGATCGGGCCCCGCGCCGATGATGTCGCCGCGCGACGCCGCCGCGCTCAGCGCCATCGACGTCTCGCGGCTCACGCTCTGGTCGctctacaacaacaacaacaacagccCGCAGCCGGATCTCGAGCCCCAACGCGAGGCGCTGAACCTAAGCGAGAGCCCCAACTCGTCGCTGGGCGCGGGCATCAAGCGCGAGGCttgccgctcgccgccgccgcccgccaagcgccgcaccccgcgccccgcctccCCCCGCGCGCCCTCCCCGCGCGCGCCCGGCACCCCCGCGCCGCAACACAACGGCAATGGAGTTAACGGGGCGGCCTTCAAAATTACCACCAGAGGAGATGCGAGCACAGGAGACCAGCAGTTAGTAGTGTCTATCGAGTTGAACGGCGTCACTTACGAAGGCGTCCTATTCCCTTCACAGAACGCCAGCGGGCAGAACGGACACAGGCAAATGGTCTCCTAA
- Protein Sequence
- MVYVASASSSGRAIGLRTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRMPASLAQLSQHMQPLSLSLGGGVPRLPPLPPHAPHISQHDIEYRVREYMKMIQQQRELMRNGSESPPGSGPAPMMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPDLEPQREALNLSESPNSSLGAGIKREACRSPPPPAKRRTPRPASPRAPSPRAPGTPAPQHNGNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSQNASGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00155094;
- 90% Identity
- iTF_00654018;
- 80% Identity
- -