Basic Information

Gene Symbol
JARID2
Assembly
GCA_033822845.1
Location
JAOPTO010001085.1:149117-155766[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 6.7 2e+04 -3.3 0.1 57 82 149 176 140 177 0.67
2 2 9.4e-23 2.8e-19 70.0 0.0 6 89 1367 1448 1363 1448 0.94

Sequence Information

Coding Sequence
atggtaTTGAGTCGAAATGATAAAAGAAAGCGTAAAGAAGGAGATTTGGTGGATCTTATGGAGCCACTCTCAGAATCTCCAAAAAGgACCAAAGTACATGCAcaaagaaaatttgcacaaGGTGCAACAACAGTTTTCAATCCTTCACATACTCCCAttaaagataaagaaaaagcTAAACCAGCTGTTATAACAGAGTTAATAACTCACAAACGACCAAATACAGAAGattttttgacatttttatGCTTTAGAGGAACCTCAATTTTACCTCcaagtttaaatttttttaatgttggtgggaaaaaagaaaaaccagATTCTAAGCCAACACGTACATCAATAGATAAAACATCTTCAAGTAGTACATCTACAGAAAATCAAAAATCAGATTTAAGTCAGAAAAATGTCACTAAAGTAAAACCTATCATCTCTGACAAAAAGAAAGTTGTAAATACAATGCAGAAGAGTATTACTACATTTAAAAGTACAACATCTACAGTACAAGcgcttaaaaagaaatatcaaGAACAACGTCTTGCTAagcaaagaattaaaaataaatttaagacaTCCTGTGTTATGAGAACTAGATCTTGCACAGAACGAACATTATTAAAACCTGCAAATAAGTTAGCACctaaaaaatttcttccaagAGTTGAGACTAAAAGGCTTGGTTTACGAAGTAGTGTTCTTGCacagaaaggaaaaaaagatcCTCCAAAAGTTAAATCTGTACCACTTAAACCAAAGAGAaaagttataataaaacaaaagaatagtGATACATCAAATTCGGATTCTAcaacagaagaagaagaagaagaaggtcCATCAGAAAAATCAATATCACAAATGAAACGTGTAGTTCAAAAGACTGCtcagaaaaatatatgtacaagAAGCAAATCTGAAATGAGAAGAATTACACGTTCTCATAGTGGTACAATTTCTCCAAAAAATCTTTGTAGAAGACCAACGAGGAAAACTAAAGAAGCAGCTGCAGTATATATGGAAATCCTTGGAAGAAAGCTTATTAGCCCTGATTTAgataatgatgataatgtTTCCATGGACAGTTTTCCAGAATTACCGAATACACGTAAAATTACTCAACTGGACAATGAAGTTAAAACTAAGGTAAAACAATCTATTGCAAAAActaatactaaaaataaagatgGCAAAATTACTTCTATTCATAGTACATCAAATAAACGATCagataaaactaaaactaataaaattggttttaaaagtaaaagattGATAAGAGTTCTAAAATATTGTGAAATTGATAGTGATGAAGAATCTGTGAGTTCTAATGAAAGTAATAACACAAGACCCGTTACTAGACGAAGTTTAGGGAAATTAAATAAACCCGCCAGCCATTATCTTAGATCTTCTACCAAAAATGTAGTTACACGATTGGAAATTCAAAacaatgtaaatattaaatcaaaAGCTCAAGttcaaaataatacaaaagttaacaaagaaaaatttgttatgaaACGTAAAcgacaaaattttaacaaatcaTTATCTGAAAAGGGTAATGGgttaaaacgaaaagaaacaaaaaatgcTGCAGATGAAACTACAGATTCTGATGAAGAAACATTAGGAATGTTActcaataaattaaaaaggaagaaagacgaaaatatacaaaaagaaattactAGTAAAAATAACGATTATGACGTTGCAAGCAAAGTTGAACAAcctttaaatgaaaattctataaaaactGATCTTTCAAAAATATCAGACGACGAAGAATCGTTTCGTGGATTTACTAAGAAAGCAATATCCAAAGTATTAAATTCTTGTCAAACACATGTCAATGTCAACCTTCTTACTACAAAAAAGACTGTTgataaattagaaacaaataaaatagaagaTGGGCACAATTCAAATGCATTTAATAAACAAGAAGATAAAGAATTATCAGATAATAAGTTttcatcaaaaataaattctccTCAAATACTGAATATATCAAATAATCAATGcattcaaaaaattgaaaacaaacAGTCAGAATTACCTGATGAAGAAtgtcaaatattaataaaaaacactGAAAAAGAATGTCATCACAAAACTGAAATTTcttctacaaatattatagATATGTCTTTATCAACATTGCATGTAAGAAAAGAGAAAGTAAATATGTCAACtgaacaaattgaaaaatggtTGAATGAAAGTTCACTTGCTAAAGAAGAAAGTAAGTTGGAAATGGAGACTGTATCTACTTTTAAGTATGATGTTTGTGAAAAAAAGACTGATATGTCACATTTATCAATCTCAACGAAAATTCAACACTTGGTCAGACCAGTCAATGTTACACTTTCTAAGTTAGCAGAAAAGGCTAATGTGAAAGATCGTATGAACTCACCCAATAAATATACTCCAATTATAACAGCAGAATTACAGTCTGATATAAAACAACAAAATGAATTTGCTAATATTAATAAGCATAATATCGattttaaagatattaataaagaaCGAAATATAAAATCATCAAATAAAGATTTAGGTTCTGGAGAAGAAGGAGAGATTGCATTAAAACCTGATCAAAATTCAACAGATGGATCTGGTGAGAAAAAATTACCAGCAGAAAAGAAGACTATATTCCAACCAAGGAAACCATTTTTACCAAAAGTTAAAGAACGTAAACTAGTAACTCCAAATGCAAATGCATTCTCTCCAGAAAATGAAAGCAGTGTTTATGCATTTGAAAGTGATACTGAAGTTCCAGTTAATACTCCCTTTAGACGTAAAATTCGTGAATCTAATAAATCAAATGTAActcttaatttatttgagactgatgcaaataaaattgaaaataattcaaataaatttgagaacaaTACAAGTAAATTTGACAATACAAATAAGTCTAACAGTGAAGTAAGCAAAAGttcagaaaaaataaaaaatgattgtGAAGTAGCAGTATTTAAAGAAAATCCtaatatttctgaaaaaaatgaaaatgaaataacagaaatgaaaaatatgtcAAATACAACTTTGAATGTAAACAAATTTGAATTACCAAAAGATTTTGCAACTTTAGCTAATATACAAGTTTTACCATTAGACAAATTGACAACAACTTGGAGTAATGTAAATTGTAGTACTTCAATAGCTGTACAAGTAAATCTTGATGACAATGCACAAACACAAGAACAAATAGAAGAAGGAAGTACAAATCAACAGAAAAGTACAGAAATATCTACTCAAACTGagagtaataatgaaaatgatgATGAAAATGATGGTCAACTATTTTATATACCTTTACAAGCTATCACAAGGAATGGACCAAATTTAGTCCAAGGACAACAATTAATTCAAGGTGTAGCTGTAAAACTTGGTACTGAAGGGCCAAATGGACCTAATCAAAAAGTTCTTTTAAGAGCTAAATTGGTTACCAAACCACCCTCATCAATTGCACGCTGTCCTCCTATAGGCACAGTGCAACCTACAACTCGTACTCCACCAAACTCTACTCTTATAACAAGTGATCATCCAGTACCATCCACTTCATCAAATGCAACTCCTATTATTACTGCATTTAATTCTGAATTTCAACCATCTTCTCcaagtaaaaatgaaaacatagTACAAACAGCAAGCAAACAAAATATTGGAACTTTGTTAAATGTAGgaacagaaaaattattaaaatctcCAAAAACTTCTAGAGAAAGAAAAACCTCCATTGACTCTAATAAGAATGGGAAAAGATGTCAAATTAAAGCAAAACAAAAAGGATCTGAAATTTATTCtccaataaataatgtaacatttccaagtgcaaaagatgaaaataatgaagcaCGTTTAGTTGAGGCTCCAACATTTCATCCTAGtgaaaaagattttcaagATCCTCTGGAATACATAGATAAAATAAGACCAATTGCAGAGAAATTTGGAATATGCAGAGTTGTACCACCACCCAATTTTAAACCGGAATGTAAAGTAGCAGATGATATGCGATTTACCGCTTATAACCAGTATGTACATCGTATGCTTCATAGATGGGGTCCTAATGTGAAGGAAATGATggctataaaaaaatatttagccACACAAAGCATAACATTAACTCATCCACCTTGGATTGGTGGTATGGAAGTTGATTTGCCTCATTTATATCAAACAGTTCAAAGCTTAGGCGGATTAAAAGAAgttattgaaaaaaagaaatggcaAAAAGTAGCTGATGGTATGAAAATACCAAAATCTGCTCAAGATCGTGTAACTAAATTAGATGACATTTATTGCAAATACCTGTTACCATATGATACATTATCTCCAgAGGAACGAGGTAAACTATTTGATGAAGTTGAATCTGAATGGTTAAAAAGAGAAAGTAGAGCTTTGCAAAGACAAAATGCACCAGTAAGTGAAAATGAAGATGATGAAGATGATGATAGTTCTGATGAAATTGAAGAATGCATTGTAAAAGGTAGAAACATGCCATTAAATGCTTTTTATCGTATTGCACGAAATACACAACGTATGTGGTTTGGTGAAAACCAGCGATCTGGAAATGAAACAGAAGGTGCTTCTGCTGATGAGGTTGAAAATGCATTTTGGAAACATGTTGCAGAAAGAAAACGACATGTTTGTGTACATGCTGCAAGCATTGATTCAAGTGGGCGTGGATTTGGATTTTCAGTTGCTAAAAATAGTCCATTTGCAAGACATCCATGGAATCTGAAAGTACTTACTAATAATGCTGGATCAGTGCTAAGAGCTTTAGGCCCTATAATGGGTGTAACAGTACCAACACTTCATGTGGGTATGTTATTTAGTGCATGTTGCTGGTATCGTGATCCTCATGGTCTTCCTTGGATAGAATATTTACATACTGGTGCTAAAAAGATTTGGTATGGTATACCAGATGAACACAACAATAATTTTAGAGATGCCCTTTCAAAAATGGTACcacgatattgtaaaaataagaCTATATGGCTACCATCAGACACAGCAATGGTACCTCCAGAATTATTGGTTAGTAATGGAGTATCATTATGCCAAACTGTACAAGAACCAGGACAgtttataattgtatttcCTAAAGCATTTACATCAAGCATATGCACTGGTTATGTGGTATCTGAAAGTGTTTACTTTGCACAACTATCTTGGTTAGAAACTGCTGAACAAGTATTTAGaGATATACAAGATAGCTGTGAACCATCAATCTTTTCATTTGAAAgattattgtttaatattattaatgattCTAGATCTCATATAGAAGTATTAAAACAgATTTTACCAAGTGTCATTAAAATTCgtgagaaagaaataaattaccGTAAACAATTAGAATTAGTAGGTCTCACAAACACAGAAAGACTACCTTTACCAGATAgtagaaaacgaaagaaagggaaaaaagtaaaagaagaTGATGGTGACTTTGAATGTGAAACTTGTAGagctaatttatttgtttcactAGTCAGCAATTCTCAAGATGATAGTGTTTACTGTTTATCACACGCATTGCagttatttaataagaaaaagcaaatattaaaatattatactttaatgTATACATACAATGAGgAAGAATTAAATGATTTGATTCATAAATTAGAAGAGAGAATTGAAGCCAAATCTAAAAAGACTAatcaaattaaacaaacaaaataa
Protein Sequence
MVLSRNDKRKRKEGDLVDLMEPLSESPKRTKVHAQRKFAQGATTVFNPSHTPIKDKEKAKPAVITELITHKRPNTEDFLTFLCFRGTSILPPSLNFFNVGGKKEKPDSKPTRTSIDKTSSSSTSTENQKSDLSQKNVTKVKPIISDKKKVVNTMQKSITTFKSTTSTVQALKKKYQEQRLAKQRIKNKFKTSCVMRTRSCTERTLLKPANKLAPKKFLPRVETKRLGLRSSVLAQKGKKDPPKVKSVPLKPKRKVIIKQKNSDTSNSDSTTEEEEEEGPSEKSISQMKRVVQKTAQKNICTRSKSEMRRITRSHSGTISPKNLCRRPTRKTKEAAAVYMEILGRKLISPDLDNDDNVSMDSFPELPNTRKITQLDNEVKTKVKQSIAKTNTKNKDGKITSIHSTSNKRSDKTKTNKIGFKSKRLIRVLKYCEIDSDEESVSSNESNNTRPVTRRSLGKLNKPASHYLRSSTKNVVTRLEIQNNVNIKSKAQVQNNTKVNKEKFVMKRKRQNFNKSLSEKGNGLKRKETKNAADETTDSDEETLGMLLNKLKRKKDENIQKEITSKNNDYDVASKVEQPLNENSIKTDLSKISDDEESFRGFTKKAISKVLNSCQTHVNVNLLTTKKTVDKLETNKIEDGHNSNAFNKQEDKELSDNKFSSKINSPQILNISNNQCIQKIENKQSELPDEECQILIKNTEKECHHKTEISSTNIIDMSLSTLHVRKEKVNMSTEQIEKWLNESSLAKEESKLEMETVSTFKYDVCEKKTDMSHLSISTKIQHLVRPVNVTLSKLAEKANVKDRMNSPNKYTPIITAELQSDIKQQNEFANINKHNIDFKDINKERNIKSSNKDLGSGEEGEIALKPDQNSTDGSGEKKLPAEKKTIFQPRKPFLPKVKERKLVTPNANAFSPENESSVYAFESDTEVPVNTPFRRKIRESNKSNVTLNLFETDANKIENNSNKFENNTSKFDNTNKSNSEVSKSSEKIKNDCEVAVFKENPNISEKNENEITEMKNMSNTTLNVNKFELPKDFATLANIQVLPLDKLTTTWSNVNCSTSIAVQVNLDDNAQTQEQIEEGSTNQQKSTEISTQTESNNENDDENDGQLFYIPLQAITRNGPNLVQGQQLIQGVAVKLGTEGPNGPNQKVLLRAKLVTKPPSSIARCPPIGTVQPTTRTPPNSTLITSDHPVPSTSSNATPIITAFNSEFQPSSPSKNENIVQTASKQNIGTLLNVGTEKLLKSPKTSRERKTSIDSNKNGKRCQIKAKQKGSEIYSPINNVTFPSAKDENNEARLVEAPTFHPSEKDFQDPLEYIDKIRPIAEKFGICRVVPPPNFKPECKVADDMRFTAYNQYVHRMLHRWGPNVKEMMAIKKYLATQSITLTHPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPEERGKLFDEVESEWLKRESRALQRQNAPVSENEDDEDDDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFGENQRSGNETEGASADEVENAFWKHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNAGSVLRALGPIMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHNNNFRDALSKMVPRYCKNKTIWLPSDTAMVPPELLVSNGVSLCQTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQLSWLETAEQVFRDIQDSCEPSIFSFERLLFNIINDSRSHIEVLKQILPSVIKIREKEINYRKQLELVGLTNTERLPLPDSRKRKKGKKVKEDDGDFECETCRANLFVSLVSNSQDDSVYCLSHALQLFNKKKQILKYYTLMYTYNEEELNDLIHKLEERIEAKSKKTNQIKQTK