Basic Information

Gene Symbol
JARID2
Assembly
GCA_963576845.1
Location
OY756247.1:22201208-22207901[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 7.7 2.7e+04 -3.4 0.1 59 82 152 177 141 178 0.56
2 2 9.5e-23 3.3e-19 70.0 0.0 6 89 1371 1452 1367 1452 0.94

Sequence Information

Coding Sequence
ATGGTGTTAAGTCGAAATgataaaagaaagagaaaagaagGAGATTTAGTGGATCTTATGGAACCACTTTCAGAATCTCCAAAGAGAACTAAAGTGCATGCACAAAGAAAATTTGCACAAGGAGCAACAAATGTTTTTAACCCCACACATACTCCCATTAAGGATAAAGAGAAAGCTAAACCAGCAGTTATAACTGAATTAATAACACATAAACGACCAAACACAGAAGATTTCTTAACATTTCTATGCTTTAGAggaaCATCAATTTTACCTCCAAGTTTAAACTTTTTCAATGTTGGAAACAAGAAAGAAAAGTCTGAACCTAAACCATTACGTACATCAGTTGATAAGAATGTATGTTCTAGTACTACATCTAATGAAAATCAAAAATTAGATACAAGTCAAAAAACTGTTACCAGAGTAAAACCTGCTGTTAATGATAAAAAGAAAGTTTCTAGtacaatacaaaaaaatattagtaCATTTAAAAGTGCTACTTCTACTGTGCAAGCACTCAAGAAAAAATATCAGGAACAACGTCTTGCTAAAGAAAGGattaaacataaatttaaaGCATCCTGTGTTATGAGAACAAGATCTTGTACAGAAAGGACTATGataaaatccacaaatcaaTTAGCCCCCAGAAAGTTTCTTCCAAGAATTGAAACTAAGAGACTTGGTTTAAGGAGCAGTGTACTTGCAGACAAAATGAAAAAGGCTTCTCCAAAAGTTAAATCTGTTCCACCTAAACCAAAGAAAAAAGTTaccataaaacaaaataatagtgATACATCAAATTCAGACTCTACATCTGAATATGAAGAGGAAGGTCCCTCAGAAAAATCAGTATCACAAATAAAACGTTCAGTTCAAAAGAATGTTCAAAAAAATATGTGTACTAGAAGTAAATCTGAAACAAGAAGAATTACTCGATCTCATACTGGGACAATTTCACCAAAAAATCTTAATAAGAGACCAACAAGAAAGACAAAAGAAGCAGCTGCAGTATATATGGAAATTCTGGGCAGAAAACTTGTAAGTCCTGATTTAGAAAATGATGATAATGGATCTATGGACAGTTTTCCAGAATTACCAAATGCACGTAAAAGTGCTCAAACAGAAAATGAAGCTAAAGTTAAAGTAAAACAGCCTGCTTCAAAAGCAGTTACTAAAACTAAGGATGGTAAAGTTACTGCTATCCACAGTGTAGCGAAAAAACGATTAGACAAAACTACAGTGAGTAAAATTGCTTTTAAAAGTAAAAGACTAATAAGGGTTCAGAAATATTGTGAAATAGATAGCGACGAAGATTCAATAAGTTCTTCTAATGAcactagtaataataacagtaataataacaataatacaagACCTGTTACACGACGAAGTttaggaaaattaaataaacccgCAAGTCGATTTCTTCGATCTTCTACGAAAAATGTAGTCACGCGAATTGAGGttcaaaataatgtaaatatcaAACCGAAACCTCAAGTTCAAACTAATGTACGATTTAATAAGGATAAATTTGTGATAAAACGCAAACGAGAACAAAATTTTGGTAAGTCATTACCTGAGAAAGGTAGTGAAATAAAGCAAAAAGAATCAAAGGTGCAAAATAATGCAGATGGAACTGCAGATTCTGATGAAGAAACTTTAGGAACAGtgcttaataaaataaaaagaaagaaagatgaTCATCCACAGACTGAAGAaatttctagtaataataataacaacaacaattGTGATGTTACAGATAAGGTTGAACAATCTTTGGATGAGAATTCTATAAAGGTGGATCTTTCAAAAGTATCAGATGATGAAGAATCTTTTCGCGGATTTACAAAGAAAACAATATCTAAAGTATTAAACTCTTGTCAAACCCACGTTAATGCTAATCTTCTAGTTGCAGAGAAAACCGAAGATACACCAAAGCCAACTAAAATAGAAGATGAGAAAAATTCAGATCCACctaataaagaagaaaatacaGAATTAATAAGTAATGAATCTTTCTTACACAAAACTACTGTTGTAGCGAATGTGCCAAATAATCAGTGTACCCAATCTGAAAGAATGCAGAAGACAAAATTGAAGTCATCTAATGAAATAGAATTTATGAAACACATTGAAAAAGAATGTCATCATAAGCCAGAAATGTCTTCTGGAAATGATGTAGATATATctttatcaacattacatgtaAGGAAAGAAAAAGTGAACATGTCTACTGAACAAATTGAGAAATGGTTAAATGAAAGTTCATTTGCTAAAGAAGAGAGTAAGTTAGAGATGGAAAATGTATCTACTTTTAAATATGATATCTGTGAGAAAAAGGCGGATGTGTCGCATTTATCTATTTCAACAAAGATTCAACATTTGGTAAGACCAGTTAATGTTACACTTTCAAAGTTGGCAGAAAAGGCAAACGCAAAAGATCGAATGAGTATACAAAGTAAATTTATATCTACTACAATAATAGATACGAAATCCAGTGAAATCAAGCAAGAAAATGAATCTACTATTGTGAATAAAACTAATGTAGATTTGAAAGATGTTAATAAAGCACGAAATGCAAAATTATGTAAAGATATATGTACTGGAGAAGAAAGTGATGTTACATTAAAATCTGATCAAACTGTAACAGATGGAACTAGTGAGAAGAAATTGTCAAATGAGAAGAAGACCATATTTCAGCCAAGAAAACCATTTTTACCAAAAGTTAAAGAACGCAAAACAGTCATTCCTAATGCAAATGCATTTTCTCcagaaaatgaaagtagtgttTATGCATTTGAAAGTGATACTGAAATTCCAGTTAATACTCCATTTAGACGTAAAGTTCGTGAATCGACCAAATCAAATGCAACTACTGTTTTGGTCGAAAGCACTGAACAAAAGTCtgaaattgatataaataaatctgaaaataatacaaataaaactGTAGAAAAGATGATTACGGATAATAGTGAGATATTGGAATCAAAAGAAACTTCCAATAATATTCCTTCACAAAAAGAATGTGAAACAGTTGAAACAAAAAATGCATCAAATACTACactgaatataaataaatttgaattacccaaaaattttgcaactttagcTAATATACAAGTTCTACCATTGGATAAGTTAACTACAACTTGGAGTAATGTAAATTGTAGTGCATCAATTGCTGTGCAAGTAaatcttgatgataatgcacAAACACAAGAACAAACAGGAGAAGGAGATTCAAACCAACATAAAAGCACAGAAATATCTACACAAACTGAGAGTAATAACGAAAATGATGATGAAAATGATGGTCAACTATTTTATATACCATTACAAGCAGTTACAAGAAATGGACCAAATTTAGTTCAAGGGCAACAATTAATTCAAGGTGTAGCTGTTAAACTTGGTACTGAAGGACCAAATGGACCTAATCAAAAAGTTCTTTTAAGAGCCAAATTAGTTACAAAACCTCCATCATCTATTGCACGTTGTCCCCCTGTGGGTACTGTACAACCCACAACTCGTACTCCACCAAATTCTACTTTTGTTACTACAGACCACTCAACACCTTCTACCTCTTCAAGTGTTACTTCAGTTATCCCTGCATCTACTTCTGAAATTCAGTCACCTTCTccatgtaaaaatgaaaacataATACAAACTGTGAGCAAACAGAACACTGCAATTTTATCAAGTACAGGAACagaaaaattaccaaaatctccaaaaactTCTAGAGAGAGAAAGACTTCCATTGACtcaaataaaaatggaaaaagATGTCAAATCAAATCAAAACAAAAAAGTGCTGAAGTTTATTCACCATCTAATAATGTAACATTTCCAAGTGCAAAAGATCTAAACAGTGAAGCATGTTTAGTTGAAGCTCCAACATTTCATCCTAGTGAAAAAGATTTTCAAGATCCTTTAGAATACATAGATAAAATAAGACCAGTGgcagagaaatttggaatatgcaGAGTTGTACCACCACCGAATTTTAAACCGGAATGTAAAGTGTCAGATGACATGAGATTTACTGCTTATAATCAGTATGTACATCGCATGCTTCATAGATGGGGACCTAATGTGAAGGAAATGATGGCTATAAAAAAATACTTGGCTACACAAAGTATAACATTGACTCATCCGCCTTggATTGGTGGCATGGAAGTTGATTTACCTCATTTATATCAGACAGTTCAAAGCTTAGGTGGATTAAAGGAAGTCATTGAAAAGAAAAAGTGGCAAAAAGTAGCTGATGGTATGAAGATACCAAAATCTGCCCAAGATCGTGTAACTAAATTAGATGacatttattgtaaatatttattaccaTATGATACATTATCCCCAGAGGAAAGAAGCAAATTATTTGACGAAGTTGAATCTGAATGGATAAAACGAGAAAGTAAAGCTTTACAGAGGCAAAATGCACCAAGTACTGGAGGAGATAATGACGAGGACGAAGAAGATGATAGCTCTGATGAAATTGAAGAATGCATTGTAAAGGGTAGAAATATGCCATTAAATGCTTTCTACCGTATCGCACGAAACACACAGCGTATGTGGTTTGGTGAAAATCAACGATCTGGAAATGAAGCTGAAGGCGCTTCTGCTGATGAGGTTGAAAGTGCATTTTGGAAACACGTTGCAGAACGAAAACGGCATGTATGTGTACATGCTGCAAGCATTGATTCAAGTGGTCGCGGTTTTGGATTCTCTGTTGCAAAAAATAGTCCATTTGCAAGACACCCATGGAATCTTAAAGTACTCACTAATAATGCTGGTTCAGTATTGCGAGCTTTAGGTCCAATAATGGGTGTGACAGTACCAACACTTCATGTAGGAATGTTATTCAGTGCATGCTGTTGGTACCGTGACCCCCACGGTCTTCCCTGGATAGAATATTTGCACACTGGTGCCAAAAAGATTTGGTATGGTATACCAGATGAACATAACAATAATTTCAGAGAAGCTCTTTCAAAAATGGTACCACGatactgtaaaaataaaactatATGGTTACCATCAGACACCGCAATGGTTCCTCCTGAATTGTTAGTTAGTAATGGAGTATCATTGTGTCATACTGTACAAGAACCAGgacaatttataattgtatttccTAAAGCATTTACATCAAGCATATGTACTGGTTATGTGGTTTCTGAAAGTGTTTACTTTGCACAACTATCGTGGCTAGAAACAGCGGAACAAGTATTTAAAgaCATACAAGATAGTTGTGAACCATCAATTTTCTCGTTCGAAAGATTATTATTCAACATTATTAATGACTCTAGATCTCATATAGAAGTGTTAAAACAGATTTTGCCAAGTGTAATTAAAATTCGTGAGAAAGAGATAAGTTCTCGAAAACAGTTAGTATCAGTGGGTCTTTTAAATACAGAAAGATTACCTCTGCCAGATAGTGGTAAAcgaaaaaaagggaagaaagtgaAAGAAGATGATGGTGATTTTGAATGTGAAGTTTGTAGAGCTAATCTATTTGTTTCGTTGGTTAGCAATTCCCAAGATGACAGTATTTACTGTTTGCCACATGCATTGCAATTATTTAACAAGAAAAAACAAACTTTAAAACATTGTACTTTAATGTATACGTATAATGAGGATGAATTGGATGAGTTAATTCATAAGTTGGAAGAAAGAATTGAAGCCAAATCTAAAAAGACTAATCAAATCAAACAGACAAAGTAA
Protein Sequence
MVLSRNDKRKRKEGDLVDLMEPLSESPKRTKVHAQRKFAQGATNVFNPTHTPIKDKEKAKPAVITELITHKRPNTEDFLTFLCFRGTSILPPSLNFFNVGNKKEKSEPKPLRTSVDKNVCSSTTSNENQKLDTSQKTVTRVKPAVNDKKKVSSTIQKNISTFKSATSTVQALKKKYQEQRLAKERIKHKFKASCVMRTRSCTERTMIKSTNQLAPRKFLPRIETKRLGLRSSVLADKMKKASPKVKSVPPKPKKKVTIKQNNSDTSNSDSTSEYEEEGPSEKSVSQIKRSVQKNVQKNMCTRSKSETRRITRSHTGTISPKNLNKRPTRKTKEAAAVYMEILGRKLVSPDLENDDNGSMDSFPELPNARKSAQTENEAKVKVKQPASKAVTKTKDGKVTAIHSVAKKRLDKTTVSKIAFKSKRLIRVQKYCEIDSDEDSISSSNDTSNNNSNNNNNTRPVTRRSLGKLNKPASRFLRSSTKNVVTRIEVQNNVNIKPKPQVQTNVRFNKDKFVIKRKREQNFGKSLPEKGSEIKQKESKVQNNADGTADSDEETLGTVLNKIKRKKDDHPQTEEISSNNNNNNNCDVTDKVEQSLDENSIKVDLSKVSDDEESFRGFTKKTISKVLNSCQTHVNANLLVAEKTEDTPKPTKIEDEKNSDPPNKEENTELISNESFLHKTTVVANVPNNQCTQSERMQKTKLKSSNEIEFMKHIEKECHHKPEMSSGNDVDISLSTLHVRKEKVNMSTEQIEKWLNESSFAKEESKLEMENVSTFKYDICEKKADVSHLSISTKIQHLVRPVNVTLSKLAEKANAKDRMSIQSKFISTTIIDTKSSEIKQENESTIVNKTNVDLKDVNKARNAKLCKDICTGEESDVTLKSDQTVTDGTSEKKLSNEKKTIFQPRKPFLPKVKERKTVIPNANAFSPENESSVYAFESDTEIPVNTPFRRKVRESTKSNATTVLVESTEQKSEIDINKSENNTNKTVEKMITDNSEILESKETSNNIPSQKECETVETKNASNTTLNINKFELPKNFATLANIQVLPLDKLTTTWSNVNCSASIAVQVNLDDNAQTQEQTGEGDSNQHKSTEISTQTESNNENDDENDGQLFYIPLQAVTRNGPNLVQGQQLIQGVAVKLGTEGPNGPNQKVLLRAKLVTKPPSSIARCPPVGTVQPTTRTPPNSTFVTTDHSTPSTSSSVTSVIPASTSEIQSPSPCKNENIIQTVSKQNTAILSSTGTEKLPKSPKTSRERKTSIDSNKNGKRCQIKSKQKSAEVYSPSNNVTFPSAKDLNSEACLVEAPTFHPSEKDFQDPLEYIDKIRPVAEKFGICRVVPPPNFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEMMAIKKYLATQSITLTHPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPEERSKLFDEVESEWIKRESKALQRQNAPSTGGDNDEDEEDDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFGENQRSGNEAEGASADEVESAFWKHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNAGSVLRALGPIMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHNNNFREALSKMVPRYCKNKTIWLPSDTAMVPPELLVSNGVSLCHTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQLSWLETAEQVFKDIQDSCEPSIFSFERLLFNIINDSRSHIEVLKQILPSVIKIREKEISSRKQLVSVGLLNTERLPLPDSGKRKKGKKVKEDDGDFECEVCRANLFVSLVSNSQDDSIYCLPHALQLFNKKKQTLKHCTLMYTYNEDELDELIHKLEERIEAKSKKTNQIKQTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01424161;
90% Identity
iTF_00963657;
80% Identity
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