Tamo012984.1
Basic Information
- Insect
- Tenthredo amoena
- Gene Symbol
- bab1_1
- Assembly
- GCA_963966615.1
- Location
- OZ016488.1:975469-977963[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.5e-08 1.6e-05 25.0 0.0 2 37 205 240 204 247 0.88 2 4 3.9e-11 2.5e-08 34.0 0.0 3 39 256 291 254 296 0.88 3 4 1.2 7.9e+02 0.4 0.0 26 34 332 340 325 345 0.83 4 4 1.1e-09 7.2e-07 29.4 0.0 4 39 371 406 356 412 0.94
Sequence Information
- Coding Sequence
- ATGTCCGAAGGCGATATTCCGTCGAGCGGTAGTCAACAACAGCCCACAATATCTCAAAGTTACTGTTTTAAATGGAACGATTACGAGAATCAAGTACCATGCGTTATTCGACAATTGTTAGAAGAGAACTCCATGGTGGACGTTACCGTTTCTGCTGACGGAATCAAGATTCATGCTCATCGCATCGTATTGTCTGCCTGTAGCACCTTCTTTCAAGAAGTATTAAACCAAGTTAATGAAGACTCTCCGACTATAATACTCAGCGGTATATCTGCGCAGGATATTCGTTGCATTATAGATTTTATGTATAATGGAGAAGTCAGTATACCGGTCGAGAATATCAGCAGTTTGTTGGACACTGCTCATTTTTTGAAGATTCATGGCCTTATGGAgATCGATGGTTTGGACGAGAGTGACGGTGTAACGTGTGAAGATTTCAGTGAAGAGACGGTAGAATCGTTGAGTGAGCTGAACGAAACTGAAGATCAGGATTTAAATGCGTTAGAACAGGAGTTTGAGAATGTGACTAATAATTCTTTGGATGGAAACAACGTCTCTACTacaaatcagaaaaaaaaacggagacgAGATACAGTTAAGAAAGAATACAGCGAAGACATGCTCATAGCTGCTATAAACGATCTAAGAACAGGGCACACTTTGATAGAGGCTGCAACTAATCACGGAATACCAAGGTCTACTTTGTATATGCGAGCCAAGGCCTTAGGTTTGCATCTAAATGCTTCTAGGAATGAATATTCTGCGGAATGTATGAAGGCGGCGATAAATGCTGTGCTAGagGGTTCGAGCTTGCAACAGGCATCGGAAATGTTTTCTATACCTAAAACTGTACTTTGGCGAAGAATTCAAAAGGAAGGATACCAAATACTTGGCCAGCGTACCGAAATGAAGAAATCTTATGACGCCGATAAGAGGGAAGCTGCGGTTAAAGCATTGGAGAGAGGGGAAAATCTCACCAAAGTTTCTTTGCAGTTTCAAATACCAAAAACGACGTTATTTAGAGACAAGGCTAGACTAGTAGATGAGGGAAAGCTCCCACTGTCGTTTTGGAAGAAACGTAAAACGGAAAACGAAGATTTAAAGAAATCGCGACTGGAAGAAGCAGTGGCAGCTTGTAAGTGTGGGAGAATGTCTCAAGCAGCAGCGTCCATGGCTTATCGAATCCCGAAGACTACAATATGGAGAAGGCTGCAgcaggatggaaaaaaattaaatcgtcCAGTAGATAACCCGAGTCAACAAAAATCTGATGATCTGGACGATATTGATGACCAAAAGGAGCAAGGGACTGAATTCACGTATTGCGAGGTCACTTCGGAGATACCGATAACATACATAGACGAAAACGGAATACCAGAAGATTCGGTGATAATTTTAACGACTGACGATGTGGATGGTATGAATCTGGAAGAAGGTACACAAATAATAGTAAGTTCGATAAATCTTGATGTATTTGTCGATTCCGCTCAAGAATACGTATCCTGCGCATTAAACATTGAGGACAGCTCAAATTACACTAACAGTGAAAGTTAA
- Protein Sequence
- MSEGDIPSSGSQQQPTISQSYCFKWNDYENQVPCVIRQLLEENSMVDVTVSADGIKIHAHRIVLSACSTFFQEVLNQVNEDSPTIILSGISAQDIRCIIDFMYNGEVSIPVENISSLLDTAHFLKIHGLMEIDGLDESDGVTCEDFSEETVESLSELNETEDQDLNALEQEFENVTNNSLDGNNVSTTNQKKKRRRDTVKKEYSEDMLIAAINDLRTGHTLIEAATNHGIPRSTLYMRAKALGLHLNASRNEYSAECMKAAINAVLEGSSLQQASEMFSIPKTVLWRRIQKEGYQILGQRTEMKKSYDADKREAAVKALERGENLTKVSLQFQIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEDLKKSRLEEAVAACKCGRMSQAAASMAYRIPKTTIWRRLQQDGKKLNRPVDNPSQQKSDDLDDIDDQKEQGTEFTYCEVTSEIPITYIDENGIPEDSVIILTTDDVDGMNLEEGTQIIVSSINLDVFVDSAQEYVSCALNIEDSSNYTNSES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01200321; iTF_01412230; iTF_01414343; iTF_01411660; iTF_00939443; iTF_01412467; iTF_01413491; iTF_00939736; iTF_01303226; iTF_01200059; iTF_01303579; iTF_01413019; iTF_00938588; iTF_00938879; iTF_01414080; iTF_00174434; iTF_00174085; iTF_00175851; iTF_00175182; iTF_00175676; iTF_00174944; iTF_00719554; iTF_00719313; iTF_00718739; iTF_00718455; iTF_01048334; iTF_01048822; iTF_01048152; iTF_01049051; iTF_00060463; iTF_00060103;
- 90% Identity
- iTF_01303579;
- 80% Identity
- iTF_01411660;