Aros000220.1
Basic Information
- Insect
- Athalia rosae
- Gene Symbol
- br
- Assembly
- GCA_000344095.2
- Location
- NW:503674-506236[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.6e-08 8e-05 21.5 0.0 2 37 201 236 200 243 0.80 2 4 3.9e-12 6.8e-09 34.6 0.0 2 39 251 287 250 292 0.89 3 4 0.17 3.1e+02 0.5 0.0 26 34 328 336 321 341 0.83 4 4 2.3e-11 4e-08 32.1 0.0 4 40 367 403 352 408 0.93
Sequence Information
- Coding Sequence
- ATGTCTGAGGAGGGTGTCAATGACAGTCAACCTATCTCCCAGAGTAGCTACTGCTTCAAATGGAGCGATTACGAGAACCACGTACCATGCGTTATCCGACAGCTATTGGAAGAGAATTGCATGGTGGATGTTACCGTTTCTGCTGATGGCCACAAGATCCATGCACATCGCATCGTGTTATCTGCTTGTAGCACCCTGTTCCAAGATCTCTTAAACCAAGTACATGAAGACTCACCAACGATTATACTCAGTGATATAGCAGCTCAGGACATTCGCTGTATCATAGACTTCATGTACAATGGTGAAGTCAGCATACCTGTGGAGAATATTAGCAGTCTGTTAGAAGCTGCTCATTTTTTGAAGATACGTGGCCTTATGGAGATTGATGGCTTGGATGAAACTGATACGACCCTTTCTGTGGAAGATTTCAATGAGGAAGCTGTAGAATCCTTGAGCGAGCTAAATGAGACTGAGGAGCAAGAACTGCAAGCACTGCAACAGGAGTACGAAAGTGTGCCTGATCCCTTAGACAGAAAAAACGTATCTACTTCAGGtttcaaaaagaaacgaagacgGGACAcaataaaaaaggaatataGTGAGGATATGCTGATGGCTGCAATCGATGATCTTAAGGCAGGGCATACATTGATAGAGGCTGCTAATAAGCATGGCATACCACGTTCTACATTATACATGCGTGCAAAAGCCTTGGGATTGCATCTGAATGCCTCTAGGAATGAATATTCTCCTGAATGTATGAAGGCTGCAATAAATTCTGTGCTGGAAGGTTCCAGTCTACAACAAGCTTCAGAAATGTTTAGCATTCCCAAAACAGTGCTGTGGCGAAGAATTCAGAAAGAAGGCTATCAAATTCTTGGGCAGCGCACTGAAATGAGGAAATCCTATGATGCTGATAAAAGAGAAGCTGCTGTTAAAGCCTtagaacgaggagaaaatctTACAAAAGTCTCCTTACAGTTCCAAATACCAAAAACCACATTGTTCAGGGATAAAGCAAGGCTGGTCGACGAAGGGAAGCTTCCACTGTCGTTCTGGAAGAAACGTAAGACGGAGaatgaagatttgaaaaaatctaggTTGGAGCAAGCGGTAGCTGCTTGTAAAGGTGGAAAAATGTCGCAGGCAGCAGCCTCTATGACCTACCATATACCCAAAACTACGATATGGAGAAGGTTGCAgcaggaaggaaaaaaattgaaccgcTCAACAAATGAGCctgaaaaatgcaaatttgAAGATCTAAATGATACTGTCGATTCGAAAGAAGACGGAACTGAATTTACGTATTGTGAGGTTACTTCGGAAATACCAATAACTTACATAGACGAAAACGGGATACCAGAAGATTCCGTGATCATTTTAACAACAGATGATGTGGAGGGAATAAACTTGGAAGAAGGAGCTCAAATAATAgaTTCTGCCGAGGAATTCGTTCCCTGCGCGTTGAATATCCAAGATGGCTCAACATATGCGCACAGTGAAAGTTAA
- Protein Sequence
- MSEEGVNDSQPISQSSYCFKWSDYENHVPCVIRQLLEENCMVDVTVSADGHKIHAHRIVLSACSTLFQDLLNQVHEDSPTIILSDIAAQDIRCIIDFMYNGEVSIPVENISSLLEAAHFLKIRGLMEIDGLDETDTTLSVEDFNEEAVESLSELNETEEQELQALQQEYESVPDPLDRKNVSTSGFKKKRRRDTIKKEYSEDMLMAAIDDLKAGHTLIEAANKHGIPRSTLYMRAKALGLHLNASRNEYSPECMKAAINSVLEGSSLQQASEMFSIPKTVLWRRIQKEGYQILGQRTEMRKSYDADKREAAVKALERGENLTKVSLQFQIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEDLKKSRLEQAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQEGKKLNRSTNEPEKCKFEDLNDTVDSKEDGTEFTYCEVTSEIPITYIDENGIPEDSVIILTTDDVEGINLEEGAQIIDSAEEFVPCALNIQDGSTYAHSES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01411401;
- 90% Identity
- iTF_00174434;
- 80% Identity
- iTF_00175851;