Npin004828.1
Basic Information
- Insect
- Neodiprion pinetum
- Gene Symbol
- br
- Assembly
- GCA_021155775.2
- Location
- CM037741.1:582427-584676[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.7e-07 0.00057 20.4 0.0 2 37 201 236 200 243 0.86 2 4 4.3e-12 9.1e-09 35.8 0.0 3 38 252 286 250 289 0.92 3 4 0.47 9.9e+02 0.5 0.0 26 34 328 336 321 341 0.83 4 4 2.1e-11 4.5e-08 33.6 0.0 4 39 367 402 352 406 0.95
Sequence Information
- Coding Sequence
- ATGTCCGAGGCTGCCAGTCCTCCGAGTCAGCCGGGGATCTCGCAGAGCTACTGTTTCAAATGGAGCGACTACGGGAGCCACGTACCATGCGTTGTTCGTCAGCTACTAGACGAGAATTGCATGGTGGACGTTACCATTTCTGCTGACGGACACAAGATTCATGCACATCGCATCGTATTATCTGCCTGTAGCACCTTGTTCCAAGAAATTCTAAATCAAGTAAACGAGGACTCACCTACAATTATACTTAGCGACGTATCTGCCAACGATGTTCGCTCTATCGTAGACTTCATTTACAACGGAGAGGTCAGCATACCTGTGGATAACATAGGGAGTCTGCTTGATACCGCCCATTCTTTGAAAATACGAGGTCTTATGGAGATAGATGGTTTGGATGAGAGTGATACCGGGACTTCCGGTGAGGATGTCAGCGAGGAGACGGTTGAATCATTTAGCGAGCTTAACGAGGCTGAAGAACAAGAATTAAACACATTGGATCAAGACTTTGAAAGTGTCGATAATCGGATCGAGCAAAGCAATATATCTGTGACTAGTCCTAAAAGGAAGCGGAGGCGAGACTCCTCCAAGAAAGACTACAGCGAAGACATGCTCATGGCTGCGATAAACGATCTCAAAACAGGGCATACCTTGGTCGAGGCCGCAACTAGTCATGGTATACCCAGGTCTACATTGTATATGCGAGCTAAAGCCCTAGGACTTCATTTAAATGCTTCTAGAAATGAGTATTCGGCGGAATGTATGAAGGCGGCGATAAATGCTGTTTTGGAGGGTTCAAGCTTGCAGCAGGCATCGGAAATATTTAGCATTCCAAAAACTGTGCTATGGCGGAGGATTCAGAAAGAAGGTTGCCAGATTCTTGGTCAACGGacagaaatgaagaaatcTTATGATGCGAATAAGAGAGAGGCTGCAGTTAAAGCTTTGGAGAGAGGTGAAAACCTCACAAAAGTGTCCCTCCAATTTCAAATTCCAAAAACGACCTTGTTCAGAGACAAAGCAAGGTTGGTGGATGAAGGAAAGCTTCCTTTGTCGTTCtggaaaaaacgaaagactGAGAAcgaggatttgaaaaaatctcgaTTAGAGCAAGCAGTGACTGCTTGCAGGGGTGGAAAAATGTCACAGGCTGCAGCATCGATGACTTACCATATCCCCAAAACAACAATATGGAGGAGGTTACAGCAGGATGGGAAAAAGCCGAATCGATCTGTAGACGAGGAGGGTAACCAAAAATCAGAAGAATTGAACGATTTGTCTGACCATAAAGAACAGGAACCTGAATTTGCGTATTGTGAGGTAACTTCAGAAATACCGATAACGTACATAGACGAAAACGGGATACCGGAAGATTCAGTGATCATTTTAACGACAGACGACGGAGATGAGCTTAACTTGGAAGAAGGTACCGAAATAATAGTAAGTTCGGACTCTACCCAAGAATATGTACCCTGCGCTCTGGACATTGAAGACAGCTCAAATTATACTCACAGTGAAAGTTAA
- Protein Sequence
- MSEAASPPSQPGISQSYCFKWSDYGSHVPCVVRQLLDENCMVDVTISADGHKIHAHRIVLSACSTLFQEILNQVNEDSPTIILSDVSANDVRSIVDFIYNGEVSIPVDNIGSLLDTAHSLKIRGLMEIDGLDESDTGTSGEDVSEETVESFSELNEAEEQELNTLDQDFESVDNRIEQSNISVTSPKRKRRRDSSKKDYSEDMLMAAINDLKTGHTLVEAATSHGIPRSTLYMRAKALGLHLNASRNEYSAECMKAAINAVLEGSSLQQASEIFSIPKTVLWRRIQKEGCQILGQRTEMKKSYDANKREAAVKALERGENLTKVSLQFQIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEDLKKSRLEQAVTACRGGKMSQAAASMTYHIPKTTIWRRLQQDGKKPNRSVDEEGNQKSEELNDLSDHKEQEPEFAYCEVTSEIPITYIDENGIPEDSVIILTTDDGDELNLEEGTEIIVSSDSTQEYVPCALDIEDSSNYTHSES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01411401;
- 90% Identity
- iTF_01048334;
- 80% Identity
- iTF_01048334;