Rchl002394.2
Basic Information
- Insect
- Rhogogaster chlorosoma
- Gene Symbol
- bab1
- Assembly
- GCA_944452905.1
- Location
- CALYCC010000007.1:1038878-1041346[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.4e-08 2.1e-05 25.0 0.0 2 37 205 240 204 247 0.88 2 4 6.9e-11 3.3e-08 34.0 0.0 3 39 256 291 254 296 0.88 3 4 2.2 1e+03 0.4 0.0 26 34 332 340 325 345 0.83 4 4 2e-09 9.5e-07 29.4 0.0 4 39 371 406 356 412 0.94
Sequence Information
- Coding Sequence
- ATGTCCGAAGGCGATAGTCCGTCGAGCGGTAGTCAACAACAGCCCACAATATCTCAAAGTTACTGTTTTAAATGGAGCGATTACGAGAATCAAGTGCCATGCGTTATTCGACAATTGTTAGAAGAGAACTCCATGGTGGACGTTACCGTTTCTGCTGACGGAATCAAGATTCATGCTCATCGCATCGTATTGTCTGCTTGTAGCACCTTCTTTCAAGAAGTATTAAACCAAGTTAACGAAGACTCCCCGACTATAATACTTAGCGGTATATCTGCCCAGGATATTCGTTGTATTATAGATTTTATGTATAATGGAGAAGTCAGTATACCAGTGGAAAATATCAGCAGTTTGTTGGACACTGCTCATTTTTTGAAGATTCATGGCCTTATGGAGATCGATGGTTTGGACGAGAGTGACGCCGCGACGTGTGAAGATTTCAGCGAAGAGACTGTAGAATCATTGAGTGAGCTTAACGAGGCTGAAGATCAGGACTTGAATGCCTTAGAACAGGAGTTTGAAAATGTGGATAATAATCCTCTGGATGAAAACAACGTCTCGCCTACAAATCAGAAGAAAAAACGGAGACGAGATACGGCTAAGAAAGAATACAGCGAAGACATGCTCATAGCTGCTATAAACGATCTCAGGACAGGGCACACTTTGATAGAGGCTGCAACTAATCACGGGATACCACGATCTACTTTGTACATGCGAGCAAAGGCCTTAGGCCTGCATCTAAATGCTTCAAGGAATGAATATTCTGCTGAATGTATGAAGGCGGCGATAAATGCTGTGTTAGAGGGTTCGAGCCTGCAACAAGCCTCAGAAATGTTTTCTATACCCAAAACTGTGCTCTGGCGAAGAATTCAGAAAGAAGGATACCAAATACTCGGCCAGCGCACGGAAATGAAGAAATCTTACGACGCCGATAAGAGGGAAGCTGCGGTCAAGGCTTTGGAGAGAGGGGAGAATCTCACCAAAGTTTCTTTGCAGTTTCAAATACCAAAAACCACGTTATTCAGAGACAAAGCTAGACTAGTGGATGAGGGAAAGCTTCCACTGTCGTTTTGGAAGAAACGTAAAACGGAGAATGAAGATTTGAAAAAATCGCGACTGGAAGAAGCAGTCGCGGCTTGTAAGTGTGGGAGGATGTCGCAAGCCGCAGCGTCTATGGCTTATCGAATCCCGAAAACTACGATATGGAGACGGCTGCAACAGGATGGAAAAAAATTAAATCGTCCAGCCGATGACCCGAGTCAACAAAAGTCTGATCTGGACGATATTGATGATCAAAAGGAACAAGGGGCTGAATTCACGTATTGCGAGGTCACTTCGGAGATACCGATAACATACATAGACGAGAACGGCATACCCGAAGATTCGGTGATAATTTTAACTACTGACGATGTGGATGGTATGAATCTGGAAGAAGGTACCCAAATAATAGTAAGTTCGGATTCGGCTCAAGAATACGTACCCTGCGCATTGAACATTGAGGACAGTCCAAATTACACTAACAGTGAAAGTTAA
- Protein Sequence
- MSEGDSPSSGSQQQPTISQSYCFKWSDYENQVPCVIRQLLEENSMVDVTVSADGIKIHAHRIVLSACSTFFQEVLNQVNEDSPTIILSGISAQDIRCIIDFMYNGEVSIPVENISSLLDTAHFLKIHGLMEIDGLDESDAATCEDFSEETVESLSELNEAEDQDLNALEQEFENVDNNPLDENNVSPTNQKKKRRRDTAKKEYSEDMLIAAINDLRTGHTLIEAATNHGIPRSTLYMRAKALGLHLNASRNEYSAECMKAAINAVLEGSSLQQASEMFSIPKTVLWRRIQKEGYQILGQRTEMKKSYDADKREAAVKALERGENLTKVSLQFQIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEDLKKSRLEEAVAACKCGRMSQAAASMAYRIPKTTIWRRLQQDGKKLNRPADDPSQQKSDLDDIDDQKEQGAEFTYCEVTSEIPITYIDENGIPEDSVIILTTDDVDGMNLEEGTQIIVSSDSAQEYVPCALNIEDSPNYTNSES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01411401;
- 90% Identity
- iTF_01303579;
- 80% Identity
- iTF_01303579;