Pate019443.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- bab1
- Assembly
- GCA_963170745.1
- Location
- OY720669.1:8683864-8686712[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.7e-08 3.1e-05 24.0 0.0 2 37 209 244 208 251 0.88 2 4 1.6e-10 1.9e-07 31.1 0.0 3 39 260 295 258 300 0.88 3 4 0.62 7.2e+02 0.4 0.0 26 34 336 344 329 349 0.83 4 4 6.1e-09 7e-06 26.1 0.0 4 39 375 410 360 416 0.91
Sequence Information
- Coding Sequence
- ATGTCGGAGAGCGATAGTCCGTCTCCGTCAACACCGAGCGATAACCAACAAACCACCGAAATATCACAAAGCTACTGTTTTAAATGGAGCGATTACGAGAATCACGTACCATGCGTACTTCGACAATTATtagaagaaaattcaatgGTTGATGTTACAGTTGCTGCCGATGGACACAAGATTCATGCCCATCGAATTGTTCTTTCTGCCTGTAGCACCTTTTTTCAAGAAGTATTAAACCTAGTAAACGAAGACTCGCCAACCATAATACTCAGCGGTATATCCGTGCAGGATCTCCGTTGCATTATAGATTTTATGTATAATGGCGAAGTCAGTATACCAGTGGAAAATATCAGCAGTCTATTAGACGCTGCACATTTCTTGAAGATTCATGGCCTTATGGAGATCGATGGTTTGGATGAGAGCGACACAACATGTGAAGATTTTAATGAAGAAACTGTAGAAGAATCTATGAGCGAGTTGAACGAGACCGAAGATCATGATTTAAACGCTTTAGAACACGAGTTTGAGAATGTAACTAATAATTCCTTCGATGGAAACAATGGTTCAACTACAAgtcaaaaaaagaaacggagacGTGATACCGTGAAGAAAGAATACAGCGAAGATATGCTCACGGCTGCTATTAACGATTTAAGAGCAGGACATACATTGATCGAGGCTGCTACTAATCATGGGATACCTCGTTCCACTTTGTACATGAGAGCCAAAGCTCTGGGACTACATCTTAATGCTTctagaaatgaatattctgcAGAATGTATGAAAGCAGCGATAAATGCTGTCCTAGAAGGCTCGAGTCTACAACAAGCTTCGGAAATGTTTACCATACCTAAGACTGTGCTTTGGCGAAGAATTCAAAAAGAAGGATATCAGATTCTTGGCCAACGtactgaaatgaaaaaatcgtacGACGCGGACAAGAGGGAAGCTGCGGTTAAAGCTTTggagagaggagaaaatcTCACCAAGGTTTCATTACAGTTTCAAATACCAAAAACTACGTTATTTAGAGACAAAGCGAGACTGGTAGATGAAGGAAAGCTTCCATTATCATTCTGGAAAAAGCGCAAAACGGAAAATGAGGATCTGAAAAAATCTCGTCTCGAAGAAGCAGTGGCTGCTTGTAAGTGCGGAAGAATGTCTCAAGCGGCAGCGTCGATGGCTTATCGTATCCCAAAAACTACGATATGGAGAAAACTACAACAGGATGGAAAGAAATCAAATCGGTCATTGGATGAATCGAATCAACGAAAATCCGAAGAATTAGATGATATCGATGATCAAAAGGAACAAGTGAATGAATTCACGTACTGCGAGGTCACTTCGGAGATACCGATAACTTACATAGACGAAAATGGTATTCCAGAAGATTCTGTGATAATTTTAACAACTGATGATGTAGATGGTATCAATTTGGAAGAAGGCACGCAAATAATTGATTCTGCTCCAGACTATGTACCTTGTGCACTGAACATCGAAGACGGCTCAAATTACACAAACAGCGAAAGTTAG
- Protein Sequence
- MSESDSPSPSTPSDNQQTTEISQSYCFKWSDYENHVPCVLRQLLEENSMVDVTVAADGHKIHAHRIVLSACSTFFQEVLNLVNEDSPTIILSGISVQDLRCIIDFMYNGEVSIPVENISSLLDAAHFLKIHGLMEIDGLDESDTTCEDFNEETVEESMSELNETEDHDLNALEHEFENVTNNSFDGNNGSTTSQKKKRRRDTVKKEYSEDMLTAAINDLRAGHTLIEAATNHGIPRSTLYMRAKALGLHLNASRNEYSAECMKAAINAVLEGSSLQQASEMFTIPKTVLWRRIQKEGYQILGQRTEMKKSYDADKREAAVKALERGENLTKVSLQFQIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEDLKKSRLEEAVAACKCGRMSQAAASMAYRIPKTTIWRKLQQDGKKSNRSLDESNQRKSEELDDIDDQKEQVNEFTYCEVTSEIPITYIDENGIPEDSVIILTTDDVDGINLEEGTQIIDSAPDYVPCALNIEDGSNYTNSES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01411401;
- 90% Identity
- iTF_01200321;
- 80% Identity
- iTF_01200321;