Aequ012259.1
Basic Information
- Insect
- Ametastegia equiseti
- Gene Symbol
- bab1_1
- Assembly
- GCA_963989295.1
- Location
- OZ022394.1:1115000-1117700[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.1e-07 0.00016 22.0 0.0 2 37 209 244 208 251 0.87 2 4 3e-10 2.3e-07 31.1 0.0 3 39 260 295 258 300 0.88 3 4 1.2 8.9e+02 0.4 0.0 26 34 336 344 329 349 0.83 4 4 1.1e-09 8.4e-07 29.3 0.1 4 40 375 411 372 416 0.92
Sequence Information
- Coding Sequence
- ATGTCCGAAGGAGACGACTGTCCGTCGTCAAACGGCGGTAGTCAACAAGCCCCGATATCGAATCAAAGCTACTGTTTTAAATggagcgatttcgagaatcaCGTACCATGCATTGTGCGACAATTATTAGAGGAGAACTCTATGGTCGACGTTACCATTTCTGCTGACGGACACAAGATTCATGCACATCGGATTGTCCTGTCTGCTTGTAGCAACTTCTTCCAAgaaatacTGAACCGAGTAAACGAAGACTCGCCGACTATAATACTCAGCGGTATATCCTCGCAGGATATTCGTTGCATCATAGACTTCATGTATAATGGAGAAGTCAGTATTCCAGTTGAGAATATCAGCAGTTTGCTTGACACTGCTCACTTCTTGAAGATTCATGGCCTAATGGAGATCGATGGCTTGGACGAGAGCGACGCAGCGACATGTGAGGACTTTGGCGAAGAAACTGTAGAAGAATCTTTGAGCGAATTAAACGAGACTGAAGAACAAGACTTAAATGCATTGGAGCAGGAGTTTGAGAATGTTGCTGATAGCCCACCGGAGGGAAACAACGTTTCAACTACAGGCCAGAAGAGAAAACGAAGACGAGATACCGCGAAGAAGGAATACAGCGAAGATATGCTCATGGCTGCAATAAACGATCTTAGGGCAGGGCACACCTTGATCGAGGCTGCTACTAATCACGGCATTCCTCGCTCTACTTTGTACATGAGAGCTAAAGCGCTAGGCTTACATCTTAACGCTTCTAGAAATGAATATTCCGCGGAATGTATGAAGGCGGCGATTAATGCTGTGTTAGAAGGCTCGAGCTTGCAACAAGCTTCGGAAATGTTTACCATACCAAAAACTGTGCTCTGGCGAAGAATCCAGAAAGAGGGCTATCAGATTCTTGGACAACgtactgaaatgaaaaaatcttacGACGCAGACAAGAGGGAAGCTGCGGTCAAAGCTTTGGAGAGAGGGGAAAACCTCACCAAAGTTTCTCTGCAATTTCAAaTACCGAAGACTACGCTATTCAGAGACAAAGCTAGACTGGTAGATGAAGGAAAGCTTCCACTATCGTTTTGGAAAAAGCGTAAGATTGAGAAtgaggatttgaaaaaatctcgacTAGAGGAAGCAGTGGCTGCTTGTAAGTTTGGGAGAATGTCTCAAGCTGCGGCATCAATGGCTTACAGAATCCCTAAAACTACAATATGGAGGCGACTGCAGcaggaagtgaaaaaaacaaatcgttCAACGGATGAAACGCATCAGCAAAAGTCTAACGATCTAGACGATATGGATGACCAAAAGGAACAAGGACCTGAATTCGCGTATTGCGAGGTGACTTCAGAAATACCGATAACATACATAGACGAGAATGGAATACCGGAAGATTCGGTGATCATTTTAACAACTGATGATGTGGATGGTATAAATCTAGAAGAAGGCACACAAATAATAGATTCCGCTCAAGAATACGTACCCTGCGGATTAAACATCCAAGAAAGCACAACCTACGCTAATAATGAAAGTTAA
- Protein Sequence
- MSEGDDCPSSNGGSQQAPISNQSYCFKWSDFENHVPCIVRQLLEENSMVDVTISADGHKIHAHRIVLSACSNFFQEILNRVNEDSPTIILSGISSQDIRCIIDFMYNGEVSIPVENISSLLDTAHFLKIHGLMEIDGLDESDAATCEDFGEETVEESLSELNETEEQDLNALEQEFENVADSPPEGNNVSTTGQKRKRRRDTAKKEYSEDMLMAAINDLRAGHTLIEAATNHGIPRSTLYMRAKALGLHLNASRNEYSAECMKAAINAVLEGSSLQQASEMFTIPKTVLWRRIQKEGYQILGQRTEMKKSYDADKREAAVKALERGENLTKVSLQFQIPKTTLFRDKARLVDEGKLPLSFWKKRKIENEDLKKSRLEEAVAACKFGRMSQAAASMAYRIPKTTIWRRLQQEVKKTNRSTDETHQQKSNDLDDMDDQKEQGPEFAYCEVTSEIPITYIDENGIPEDSVIILTTDDVDGINLEEGTQIIDSAQEYVPCGLNIQESTTYANNES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01411401;
- 90% Identity
- iTF_00060463;
- 80% Identity
- iTF_00060463;