Pelw001433.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio elwesi
Gene Symbol
L
Assembly
GCA_029641285.1
Location
CM056337.1:7141098-7146236[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.47 41 5.4 5.8 1 23 3 25 3 25 0.97
2 16 6.3e-06 0.00055 20.7 4.1 1 23 31 53 31 53 0.99
3 16 1.9e-05 0.0017 19.1 0.1 1 23 59 81 59 81 0.98
4 16 8e-05 0.007 17.2 0.2 2 23 100 122 99 122 0.96
5 16 6.9 6.1e+02 1.7 0.3 3 23 146 168 144 168 0.78
6 16 0.46 40 5.4 0.0 3 23 224 244 223 244 0.97
7 16 0.066 5.8 8.0 0.0 3 23 259 279 258 279 0.93
8 16 0.00033 0.029 15.3 1.2 1 23 287 310 287 310 0.91
9 16 0.0084 0.74 10.8 0.1 1 23 315 338 315 338 0.92
10 16 0.0017 0.15 13.1 0.1 1 23 389 413 389 414 0.94
11 16 0.00015 0.013 16.4 0.1 2 23 470 491 469 491 0.96
12 16 0.092 8.1 7.6 0.0 1 23 497 519 497 519 0.97
13 16 3.3 2.9e+02 2.7 0.4 2 23 527 548 526 549 0.93
14 16 0.56 49 5.1 0.2 3 23 625 645 624 645 0.95
15 16 0.0026 0.23 12.5 0.1 1 20 653 672 653 675 0.95
16 16 0.085 7.5 7.7 0.3 1 23 682 704 682 704 0.94

Sequence Information

Coding Sequence
ATGCCGTTCCGCTGCGAGTTCTGCTCGCGGCTGTTCAAGCACAAGCGGTCGCGCGATCGCCACGTCAAGCTGCACACCGGCGACCGCAAGTACCGCTGCGCCCACTGCGAGTCCGCCTTCTCCAGAAGTGACCATCTGAAGATCCACATGAAGACGCACGACAACCAGAAGCCTTTCCAGTGCACGGTGTGCAATCGCGGCTACAACACTGCGGCCGCGCTCACCTCGCACATGCAGGGCCACAAGCGCGACCGAGCGCCACGCGAGACCAGAGACCACGACCGTCGCAGGACTACACGATGCCTGCATTGCGGGGACGCTTTTCGAAGGCCGGAAATGCTTCAGGCCCACATGGCGACAGCTCACGGCGTGGATGCAGCGTCCTTGACTCCACCGCGCCGCGTCGCCTCACAGCCGCAGCCTACTCTCCTCGCCTGCATGTACTGTACTAGGGATACGTTCACCAGCATGGAGCAGCTACTACTGCACGTACGTGCAAATCACTCGGCGCTGCTGAACGGTGACAGCGCAATGCCGCCAGTCCTCGAACAACCGACTCCGACAGACCTCAGTCGGAGAACCAGTAATGACGTCACCATTGCAAAACGTCCTAAATCAAGTTCAGAATCGGCAACGCCGCAAACTGCGCTATCTCCAAGTACACTTCTGTGCAATCAGTGCGACGCAGCCTTACCAGATTTCGAAGCGTTTAGAGCTCATGTAAAAGGACACCTCGAAGAAGGTGGTGAACTCAGTCGCTCCAGCCCCGCGCCCTGTGTTCACTGTGGCGCTAGTTTCGCGGACGTGGCGGCGACAGAGCGCCACCTGGCGGCGCACTACCTAGCGGTCACCTGCGAGTACACGTGCCACAGCTGCGTGCGCAATTTCCCCACACCGGACGACTTGCAGAAACATCTCTTCGATTTACACGCTCATCATTTGTATCGCTGTTCACTTTGTAAGGAAGTGTTCGATTCAAAAGTTGCCATTCAGGTGCATTTCGCGGTGGCACACAGCGGCGAGAGCAAGGTGTGGGTGTGTCGCCCGTGCGGTGTCGGTGGCGGCGCTATGCGGTCAGAGGCAGAGGGCGCAGCGCACGTGCGGACGAGGCACGCCGGCGCGCGCTGTCGCTGTGGTGCCATGCTGGCCGCGCCGCGTCGCCACTACCGCTGCCCTGCGCCCGCCTGCCCCGACACCTTCGCTGTCCAGTACCTGCTGGAGAGGCACATGCAGATGCATCACGCAGTTGCACAACAGACATTAAACGGCGAAATAGTCCGTCCGAAGCGCTTGGAAAACAACAATGTCGAAGGTGACGGTCCGTGCTCGCCATGCGCGCCTGCCGCGGCGGGCGACGGCGCTTGTGGGCTCGACGAGCGGCGCAGGAAGAACGGCGCGGTGGCGCTGCAGTGCGCCTATTGCGGGGAACGCACGCGTAGCCGCGCCGAGCTCGAGGCGCACACGCGCGCACACGCTGGTGCTGCACGACACAAGTGCCTCATCTGTGATGAAGTTCTACCCTCCGCCGGGGTACTGGCCGAACATAAACTGTCGCACTGCAAGgtAATTACTGGCGATACGTGTTCGCGGTGCCGAGCGAGGCTGCCGTCCGAAGAAGCGTTCCTCGGTCACATGGCGCGACACCACTCCGCGCTGCCCGCGCCCTGCGTTGTCTGCCGCCAGACGTTAGCCTCCGAAGCCGAGGCTCGGCTCCACGCACGCTTCCATTTGCGCCCAAATGACGACGAACAACGCTGCGCGATATGCCTCCGACCGTTGACCAAGAGCGAGGCCGGGGAGGGGGTCAGAGCGTGCTCATCCTGCTACGCGCGCCACGCTACGCCGCGGCCCCAGCAAACGGCAGATAACGACTGCCGCCTCTGCAGACGCTCCCTCGGCTCGCCGACGCGGCTGCAGGCGCATCTGATAGAACACACATTCGCAGGCATCGGCGCATTCACTTGTTACTTGTGCTCGGCGGTGTTCACGAGCGCCGCTGGCCTGCAGCGCCACCTGCCCGAGCACGCGAGCGCGCCGCGCCCCTACGACTGCGCGCGATGCGGGATGAAGTTCTTCTTCCGCGCCGAACTGGATAACCATGCATTTGTGCATATCGAGGAGGCGGAAATAGCTCAGAGAGCGTTCTATGAGGCTTATGCGAGAGGCGCCGCGTCGGCTTGGGCGGCGCTCGCTCCGCCACCGGATTCTACACCTATGCCGTCGGTTTCTGGTCCCGTTCTGGCTACTAACGATCATCCGGTTAAAAAAGAACCGGAAATAAAAGAAGAACGTAATGTTGAAGAATATATCGAAGTGTCGTCACCCCCGCCTCCCGCTCCTGTGCCGCCCACCCCCGCCCCTGCAACGGCCTCCCCCGCGCCGGTGGTGAAGCAGGAGAAGCCCGAGGACTGA
Protein Sequence
MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRAPRETRDHDRRRTTRCLHCGDAFRRPEMLQAHMATAHGVDAASLTPPRRVASQPQPTLLACMYCTRDTFTSMEQLLLHVRANHSALLNGDSAMPPVLEQPTPTDLSRRTSNDVTIAKRPKSSSESATPQTALSPSTLLCNQCDAALPDFEAFRAHVKGHLEEGGELSRSSPAPCVHCGASFADVAATERHLAAHYLAVTCEYTCHSCVRNFPTPDDLQKHLFDLHAHHLYRCSLCKEVFDSKVAIQVHFAVAHSGESKVWVCRPCGVGGGAMRSEAEGAAHVRTRHAGARCRCGAMLAAPRRHYRCPAPACPDTFAVQYLLERHMQMHHAVAQQTLNGEIVRPKRLENNNVEGDGPCSPCAPAAAGDGACGLDERRRKNGAVALQCAYCGERTRSRAELEAHTRAHAGAARHKCLICDEVLPSAGVLAEHKLSHCKVITGDTCSRCRARLPSEEAFLGHMARHHSALPAPCVVCRQTLASEAEARLHARFHLRPNDDEQRCAICLRPLTKSEAGEGVRACSSCYARHATPRPQQTADNDCRLCRRSLGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGMKFFFRAELDNHAFVHIEEAEIAQRAFYEAYARGAASAWAALAPPPDSTPMPSVSGPVLATNDHPVKKEPEIKEERNVEEYIEVSSPPPPAPVPPTPAPATASPAPVVKQEKPED