Lcur019167.1
Basic Information
- Insect
- Lamproptera curius
- Gene Symbol
- L
- Assembly
- GCA_029286875.1
- Location
- JAGSMT010000077.1:2428876-2433953[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.44 69 5.4 5.8 1 23 3 25 3 25 0.97 2 15 5.9e-06 0.00093 20.7 4.1 1 23 31 53 31 53 0.99 3 15 1.8e-05 0.0029 19.2 0.1 1 23 59 81 59 81 0.98 4 15 0.00018 0.029 16.1 0.1 2 23 97 119 96 119 0.96 5 15 4.2 6.6e+02 2.3 0.1 9 23 150 165 146 165 0.93 6 15 0.096 15 7.5 0.0 3 23 221 241 220 241 0.98 7 15 0.067 11 8.0 0.0 3 23 255 275 254 275 0.93 8 15 8.3e-05 0.013 17.1 1.2 1 23 283 306 283 306 0.91 9 15 0.023 3.6 9.5 0.1 1 23 311 334 311 334 0.92 10 15 0.022 3.5 9.5 0.2 1 23 385 409 385 410 0.94 11 15 0.00014 0.022 16.4 0.1 2 23 458 479 457 479 0.96 12 15 2.4 3.7e+02 3.1 1.0 2 23 503 524 502 525 0.93 13 15 0.53 83 5.2 0.2 3 23 601 621 600 621 0.95 14 15 0.0024 0.38 12.5 0.1 1 20 629 648 629 651 0.95 15 15 0.08 13 7.7 0.3 1 23 658 680 658 680 0.94
Sequence Information
- Coding Sequence
- ATGCCATTCCGCTGCGAGTTTTGTTCAAGACTGTTCAAGCACAAGCGATCCCGAGACCGCCATGTAAAACTACACACTGGCGACAGGAAATATCGCTGTGCCCATTGCGAGTCTGCGTTTTCGAGAAGCGACCATCTTAAGATTCACATGAAGACGCACGACAATCAGAAGCCATTCCAGTGCACTGTATGCAACCGCGGCTATAATACCGCAGCAGCATTGACATCCCACATGCAAGGCCACAAACGGGATAGGGAGGGCCGCGACCACGACCGTCGGAGGGCGCTGAGGTGCTTGCAGTGCGGTGACGCTTTTCGACGTCCCGAAATGCTACAGGCTCACATGGCTACCACGCACGGTATAGACGCTGCTTCAATGACACCGCCGCGTCGAGTGGCTTCTCAGCCGCCGCCTACTCTGCTCGCGTGCATTTACTGCACGCGTGACACGTTCACCAGCATGGAGCAGCTGCAACTGCACGTGCGTGCCGCTCATTCGGCACTGTTGAACGGGGACACTGCTATACCAACTTCCGTAGAGCAACCGGCGCCGACGGACCTAAGCCGCAGGACGACAGATGACGTCCCAAGTGCTAAACGCCCCAGGTCCAGCTCCGGGTCAGCGACACCCCAAGCTACGTTATCACCAAGTACACTACTATGCAACCAGTGTGACGCGGCATTGCCAGACTTTGAAGCGTTCCGAGCTCATCTCAGAGGCCACCTAGAGGAAGGAGAACTGAACCGATCGAGCCCCGCACCTTGCGTTCATTGCGGTGCCAGTTTCGCGGATATCACTGCAACAGAGCGCCATCTAGCGGCACACTATCTAGCTGTTTCCTGCGAGTACACTTGCCACAGCTGCGTGCGTAGCTTCCCTACTCCGGACGACTTGCAGAAGCACCTGTTCGACTTGCACGCACACCATTTGTACCGATGTTCACTGTGCAAGGAAATCTTCGACTCGAAAGTCGCAATTcagGTGCACTTCGCGGTCGCGCACAGCGGCGAGAGCAAGGTATGGATGTGCCGTCCGTGCGGCGCGAGCGGCGGCGCGATGCGCTCGGAGGCGGAGGGCGCGGCGCACGTGCGCGCAAGGCACGCAGCGGCGCGGTGCGGCTGTGGCGCCGTGCTGCCGGCACCGCGGCGCCCCTACCGCTGCCCGGCGCCCGCATGCACCGACAGCTTCGCAGTGCAGTACTTGTTGGAGCGGCACGTGCAGATGCATCATGTGGCGCAGACATTGAACGGCGATATGCGTCCAAAGCGCGACAACAACAACGCACCCGAGGACGGTGCGTGTTCGCCGTGCGTCGGCGACGTGAATCAAGTGAGCGACGAGCGCCGACGCAAGAACGGCGCCGTGGCCCTGCAGTGCGCGTACTGCGGCGAGCGGACGCGCAGCAGGGCAGAACTTGAGGCGCACACTAGAGCGCACGCGGGCGCCGCACGACACAAATGTCTCATTTGCGACGAGCTATCGCACTGCAAGGTTATCGCTGGCGACACATGTTCCCGATGCCGTTCACGACTGCCATCCGAAGAGGCGTTCCTCAGCCACATGGCACGGCACCATCCAGCGCTGCCTGCACCATGCGTTGTGTGCCGCCAGACGCTGGCATCTGAAGCCGAAGCGCGACTCCATGCGCGCTTCCACCTTCGCCCGAGTGAGGACGAGCAACGCTGCGCGATATGCCTCAGGCCTCTGACCGAGAGCGAGGCCGGTGAAGGAGTCAGGGCTTGCTCAGCGTGCTATGCACGTCACTCCACTCCTAGACCTCCGCCCATCACCGACAACGACTGCCGCCTCTGCCGCCGCTCACTCGGCTCACCGACCCGCCTTCAAGCGCATCTAATTGAGCACACCTTCGCAGGCATCGGTGCTTTCACATGCTACCTCTGCTCTGCAGTCTTCACTAGTGCCGCTGGTTTACAGCGCCATCTACCCGAACACGCGTCCGCCCCACGTCCTTATGATTGCGCCCGCTGCGGCATGAAATTCTTCTTCCGCGCCGAACTTGATAACCACGCATTTGTACATATCGAGGAGGCCGAATTGGCTCAGAGAGCTTTTTATGAAGCCTACGCAAGAGGAGCAGCGTCGGCTTGGGCAGCTCTTGCCCCTCCACCGGATGTTCCAATTTCCTCAGTCACGGCACCGATCTCTACTATTTCTGAGGTACCAGTTAAGATAGAGCCAGAGATTAAAGAAGAACGTAATACGGAGGAATACATAGAGGTGTCCTCGCCACCACCGCCCGCCCCCGCCGCTTCGTCCACTCCACCACCCTCAAAGACCTCACCCGCTCCGGTAGTGAAACAAGAGAAACCCGACGAAGATTAA
- Protein Sequence
- MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGRDHDRRRALRCLQCGDAFRRPEMLQAHMATTHGIDAASMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGDTAIPTSVEQPAPTDLSRRTTDDVPSAKRPRSSSGSATPQATLSPSTLLCNQCDAALPDFEAFRAHLRGHLEEGELNRSSPAPCVHCGASFADITATERHLAAHYLAVSCEYTCHSCVRSFPTPDDLQKHLFDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGESKVWMCRPCGASGGAMRSEAEGAAHVRARHAAARCGCGAVLPAPRRPYRCPAPACTDSFAVQYLLERHVQMHHVAQTLNGDMRPKRDNNNAPEDGACSPCVGDVNQVSDERRRKNGAVALQCAYCGERTRSRAELEAHTRAHAGAARHKCLICDELSHCKVIAGDTCSRCRSRLPSEEAFLSHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPSEDEQRCAICLRPLTESEAGEGVRACSACYARHSTPRPPPITDNDCRLCRRSLGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGMKFFFRAELDNHAFVHIEEAELAQRAFYEAYARGAASAWAALAPPPDVPISSVTAPISTISEVPVKIEPEIKEERNTEEYIEVSSPPPPAPAASSTPPPSKTSPAPVVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141854;
- 90% Identity
- -
- 80% Identity
- -