Basic Information

Insect: Bhutanitis thaidina
Gene Symbol: L
Assembly: GCA_029286595.1
Location: JAGSMS010000011.1:11648025-11654142[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.52 33 5.4 5.8 1 23 3 25 3 25 0.97

2 16 6.9e-06 0.00045 20.7 4.1 1 23 31 53 31 53 0.99

3 16 2.1e-05 0.0014 19.2 0.1 1 23 59 81 59 81 0.98

4 16 0.00021 0.013 16.1 0.0 2 23 97 119 96 119 0.96

5 16 4.9 3.2e+02 2.3 0.1 9 23 150 165 146 165 0.93

6 16 0.25 16 6.4 0.0 3 23 221 241 220 241 0.97

7 16 0.073 4.7 8.0 0.0 3 23 256 276 255 276 0.93

8 16 0.00015 0.0096 16.5 1.1 1 23 284 307 284 307 0.91

9 16 0.014 0.93 10.3 0.1 1 23 312 335 312 335 0.92

10 16 0.29 19 6.2 0.1 1 23 386 410 386 411 0.90

11 16 0.00016 0.011 16.4 0.1 2 23 466 487 465 487 0.96

12 16 0.11 7 7.5 0.0 1 23 493 515 493 515 0.96

13 16 1.9 1.2e+02 3.6 0.4 2 23 523 544 522 545 0.93

14 16 0.62 40 5.1 0.2 3 23 621 641 620 641 0.95

15 16 0.0029 0.18 12.5 0.1 1 20 649 668 649 671 0.95

16 16 0.094 6.1 7.7 0.3 1 23 678 700 678 700 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.52	33	5.4	5.8	1	23	3	25	3	25	0.97
2	16	6.9e-06	0.00045	20.7	4.1	1	23	31	53	31	53	0.99
3	16	2.1e-05	0.0014	19.2	0.1	1	23	59	81	59	81	0.98
4	16	0.00021	0.013	16.1	0.0	2	23	97	119	96	119	0.96
5	16	4.9	3.2e+02	2.3	0.1	9	23	150	165	146	165	0.93
6	16	0.25	16	6.4	0.0	3	23	221	241	220	241	0.97
7	16	0.073	4.7	8.0	0.0	3	23	256	276	255	276	0.93
8	16	0.00015	0.0096	16.5	1.1	1	23	284	307	284	307	0.91
9	16	0.014	0.93	10.3	0.1	1	23	312	335	312	335	0.92
10	16	0.29	19	6.2	0.1	1	23	386	410	386	411	0.90
11	16	0.00016	0.011	16.4	0.1	2	23	466	487	465	487	0.96
12	16	0.11	7	7.5	0.0	1	23	493	515	493	515	0.96
13	16	1.9	1.2e+02	3.6	0.4	2	23	523	544	522	545	0.93
14	16	0.62	40	5.1	0.2	3	23	621	641	620	641	0.95
15	16	0.0029	0.18	12.5	0.1	1	20	649	668	649	671	0.95
16	16	0.094	6.1	7.7	0.3	1	23	678	700	678	700	0.94

Sequence Information

Coding Sequence: ATGCCGTTCCGCTGCGAGTTTTGCTCAAGATTGTTCAAGCACAAACGTTCGCGCGACCGACACGTCAAGCTGCACACTGGCGACCGCAAGTACCGCTGTGCACATTGTGAATCTGCTTTTTCCAGAAGTGATCATCTGAAGATTCACATGAAGACGCACGATAACCAGAAGCCGTTCCAATGTACGGTGTGCAATCGCGGCTACAACACGGCCGCGGCTCTGACGTCGCACATGCAGGGTCATAAACGGGATCGGGAAGGGCGCGACCAAGATCGCCGAAGAACCTTGCGATGCTTGCAATGTGGCGATGCTTTTCGACGTCCTGAAATGCTACAGGCACACATGGCCACAGCTCATGGCATTGACGCAGCTTCTTTAACACCACCCCGACGCGTTGCGTCTCAACCGCCCCCGGCTCTTCTTGCCTGTATATACTGCACAAGGGATACGTTCACTAGCATGGAGCAGTTGCAATTACACGTACGCGCCGCTCATTCGGCTCTATTGAATGGTGAAACAGCAATGCCTTCGAATATGGAACAACCGACGCCCACAGACCTAAGTCGCAGGACAAGTGATGACGTTACAACGGCAAAACGTCCGAGATCTAGTTCAGGGACAACTACGCCGCAAACTGCATTGTCTCCAAGCACTCTACTCTGTAACCAGTGTGATGCGGCCTTGCCTGATTTCGAAGCGTTTCGAGCTCATCTCAAAGGCCACTTGGAAGAAGGAGGAGAACTCAGCCGGTCTAGTCCTGCGCCATGTGTTCACTGCGGTGCTAGTTTTGCGGACGTTGCTGCTACCGAGCGCCATTTGGCGGCACATTATTTAGCAGTAACCTGCGAGTATAGTTGCCACAGTTGTGTGCGCAGTTTTCCAACACCAGACGACTTGCAAAAACATCTTTTTGATTTGCACTCCCACCATCTGTATCGCTGTTCTCTATGTAAAGAAATGTTCGATTCAAAAGTTGCTATTCAGGTGCATTTCGCGGTCGCGCACAGCGGCGAGAACAAAGTGTGGATGTGCCGGCCGTGCGGCGCGAGCGCGGGCGCGCTGCGGTCGGAAGCGGAGGGCGCGGCACACGTGCGCGCGCGGCACGCGGCCGCCCGCTGCGGCTGCGGCGCCGTGTtggccgcgccgcgccgcgcctaCCGCTGCCCCGCGCCCGCCTGCGCCGACAGTTTCGCCGTGCAGTACCTACTCGAGCGGCACGTGCAGTTGCACCACGCCGCCGTGCAGCAGTCCTTAAACGGAGAAATAGTTAGGCAAAAACGGGCGGATAACAACAATAGCGCGGAGGGCGGCGACGGAGCGTGCTCGCCGTGCGTCGGCGGCGACGGCAGCCTGCTCGGCGACGAGCGGCGGCGGAAGAATGGTGCCGTCGCCCTGCAGTGCGCCTACTGCGGCGAGCGCACGCGCAGCCGCGCTGAACTGGAGGCGCACACGCGAGCGCACGCCGGCGCAGCCCGCCACAAATGCCTCATCTGCGATGAGGTGCTGCCCTCCGCCGCGGTGTTAGCCGAGCACAAGCTCTCACATTGCAAGGTTATCGCTGGCGACACATGTGCACGATGCCGAGCCAGGCTCCCGTCGGAAGAAGCGTTCCTTACTCATATGGCAAGACATCATCCCGCGCTACCTGCACCCTGCGTTGTCTGTCGACAGACTCTAGCTTCCGAAGCAGAAGCGCGACTGCACGCCCGTTTTCATCTGCGTCCAAATGAAGACGAACAACGATGCGCAATATGCCTTAGAGCTTTATCTGAAAGCGAAGCTGGTGATGGAGTCAGAGCTTGCTCCGCTTGCTACGCTCGTCACTCTACACCGAGACCACCACCAACTGCTGACAACGACTGTCGACTCTGTAGACGATCCCTCGGATCGCCGACCCGACTACAAGCACATCTCATCGAACACACGTTTGCGGGAATAGGTGCATTCACCTGCTATTTATGCTCAGCTGTGTTTACAAGTGCAGCTGGATTACAGCGACATCTTCCCGAACACGCGGCCGCACCGCGGCCTTACGACTGCGCCCGCTGTGGAATGAAGTTCTTTTTCCGCGCTGAGCTCGATAACCACGCCTTTGTACATATCGAAGAGGCAGAAATAGCTCAAAGAGCATTTTACGAGGCGTATGCACGGGGCGCCGCTTCGGCATGGGCGGCTCTAGCCCCGCCACCTGACGCTACACCCATGCAGACTGTTTCAGGTTCTGTTCCGGCTGCATCCGAAGTTGCAGTAAAATTGGAACCAGAGATAAAAGAAGAACGCAACGCTGAAGAATACATAGAAGTGGCGTCTCCTCCCCCTCCCGCTCCGCAGCCGCCTCCAACGACTGCGTGTTCGCCAGTCCCGGTAGTGAAGCAAGAGAAATCTGACGAAGATTGA
Protein Sequence: MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGRDQDRRRTLRCLQCGDAFRRPEMLQAHMATAHGIDAASLTPPRRVASQPPPALLACIYCTRDTFTSMEQLQLHVRAAHSALLNGETAMPSNMEQPTPTDLSRRTSDDVTTAKRPRSSSGTTTPQTALSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELSRSSPAPCVHCGASFADVAATERHLAAHYLAVTCEYSCHSCVRSFPTPDDLQKHLFDLHSHHLYRCSLCKEMFDSKVAIQVHFAVAHSGENKVWMCRPCGASAGALRSEAEGAAHVRARHAAARCGCGAVLAAPRRAYRCPAPACADSFAVQYLLERHVQLHHAAVQQSLNGEIVRQKRADNNNSAEGGDGACSPCVGGDGSLLGDERRRKNGAVALQCAYCGERTRSRAELEAHTRAHAGAARHKCLICDEVLPSAAVLAEHKLSHCKVIAGDTCARCRARLPSEEAFLTHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPNEDEQRCAICLRALSESEAGDGVRACSACYARHSTPRPPPTADNDCRLCRRSLGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHAAAPRPYDCARCGMKFFFRAELDNHAFVHIEEAEIAQRAFYEAYARGAASAWAALAPPPDATPMQTVSGSVPAASEVAVKLEPEIKEERNAEEYIEVASPPPPAPQPPPTTACSPVPVVKQEKSDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01141854;
90% Identity: iTF_00923049;
80% Identity: -