Basic Information

Insect: Papilio memnon
Gene Symbol: L
Assembly: GCA_003118335.3
Location: JAOPJP010000012.1:4321000-4324926[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.4 34 5.5 5.8 1 23 3 25 3 25 0.97

2 15 5.4e-06 0.00046 20.8 4.1 1 23 31 53 31 53 0.99

3 15 1.7e-05 0.0014 19.3 0.1 1 23 59 81 59 81 0.98

4 15 7e-05 0.006 17.3 0.3 2 23 106 128 105 128 0.96

5 15 3.8 3.3e+02 2.4 0.1 9 23 159 174 155 174 0.93

6 15 0.39 34 5.5 0.0 3 23 230 250 229 250 0.97

7 15 0.062 5.3 8.0 0.0 3 23 265 285 264 285 0.93

8 15 7.5e-05 0.0065 17.2 1.2 1 23 293 316 293 316 0.91

9 15 0.019 1.7 9.6 0.1 1 20 321 340 321 342 0.93

10 15 0.00013 0.011 16.5 0.1 2 23 405 426 404 426 0.96

11 15 0.078 6.8 7.7 0.0 1 23 432 454 432 454 0.97

12 15 2.8 2.4e+02 2.8 0.4 2 23 462 483 461 484 0.93

13 15 0.26 22 6.1 0.5 1 23 558 580 558 580 0.94

14 15 0.0022 0.19 12.6 0.1 1 20 588 607 588 610 0.95

15 15 0.097 8.3 7.4 0.3 1 23 617 639 617 639 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.4	34	5.5	5.8	1	23	3	25	3	25	0.97
2	15	5.4e-06	0.00046	20.8	4.1	1	23	31	53	31	53	0.99
3	15	1.7e-05	0.0014	19.3	0.1	1	23	59	81	59	81	0.98
4	15	7e-05	0.006	17.3	0.3	2	23	106	128	105	128	0.96
5	15	3.8	3.3e+02	2.4	0.1	9	23	159	174	155	174	0.93
6	15	0.39	34	5.5	0.0	3	23	230	250	229	250	0.97
7	15	0.062	5.3	8.0	0.0	3	23	265	285	264	285	0.93
8	15	7.5e-05	0.0065	17.2	1.2	1	23	293	316	293	316	0.91
9	15	0.019	1.7	9.6	0.1	1	20	321	340	321	342	0.93
10	15	0.00013	0.011	16.5	0.1	2	23	405	426	404	426	0.96
11	15	0.078	6.8	7.7	0.0	1	23	432	454	432	454	0.97
12	15	2.8	2.4e+02	2.8	0.4	2	23	462	483	461	484	0.93
13	15	0.26	22	6.1	0.5	1	23	558	580	558	580	0.94
14	15	0.0022	0.19	12.6	0.1	1	20	588	607	588	610	0.95
15	15	0.097	8.3	7.4	0.3	1	23	617	639	617	639	0.94

Sequence Information

Coding Sequence: ATGCCATTCCGGTGCGAGTTCTGTTCGCGTCTGTTCAAGCACAAGCGATCGCGGGACCGGCACGTCAAACTGCACACCGGCGACCGCAAGTACCGCTGTGCGCACTGCGAGTCCGCATTCTCTAGAAGTGATCATCTAAAAATCCACATGAAAACGCACGACAACCAGAAGCCGTTCCAATGCACGGTGTGCAACCGTGGCTACAACACGGCGGCTGCGCTTACCTCGCACATGCAGGGCCACAAGCGAGACAGAGCGCCACGTGATCCGCGCGACCCTCGCGAGACCAGGGATCACGATCGCCGCAGGACCACGCGCTGCTTGCACTGCGGAGACGCTTTCCGAAGACCGGAAATGCTTCAGGCCCATATGGCGACAGTCCATGGCGTGGACGCTGCTTCTCTGACGCCGCCGCGCCGCGTCGCGTCCCAGCCGCCGCCGACACTGCTCGCGTGCATCTATTGCACCCGGGACACCTTTACCAGCATGGAGCAGCTTCAACTGCACGTCCGCGCCGCTCACTCCGCGCTGCTGAACGGCGACTCCTTGATGACTTCAACCCTCGAGCAACCGACACCCACCGACCTCAGTCGGAGAACTAGCGATGACGTCCCAATAGCAAAACGTCCCAAGTCAAGCTCGGAATCTGCAACGCCCCAAACTGCGCTATCTCCGAGTACACTCTTATGTAATCAGTGCGACGCAGCATTACCGGATTTCGAAGCTTTTAGAGCTCATGTGAAAGGCCACCTCGAGGAAGGCGGTGAGCTGAGCCGCTCGAGCCCCGCGCCCTGCGTGCACTGCGGCGCCACATTCGCTGACGTGGCGGCCACAGAGCGACACCTGGCGGCGCACTACCTCGCCGTCTCCTGCGAGTACACCTGCCACAGCTGCGTGCGCAGCTTCCCCACGCCCGACGACTTGCAGAAACATCTTTTTGATCTACACGCTCATCATTTGTATCGCTGTTCTCTTTGTAAAGAAGTCTTTGATTCCAAAGTAGCTATTCAGATGCACCACGCCGTCATGCAACAGACGTTGAACGGTGAAATGGTCCGACCAAAACGCATGGACAACAACAATGTTGATGGCGAGGATGCGTGCTCGCCGTGCGCGACAGGCGTCACAGGCGCAGGGGGCGCGGGAGGCGCGGCGACCGACAGCGCCGGTGTGCTGGACGAGCGACGCAGAAAGAACGGCGCGGTGGCGCTGCAGTGCGCGTACTGCGGGGAGCGCACGCGCAGTCGCGCAGAGCTCGAGGCGCACACGCGCGCGCACGCCGGCGCCGCCAGACACAAATGCCTCATCTGCGACGAGGTGCTACCCTCCGCGGGGGTTCTGGCAGAACATAAGCTATCGCACTGCAAGGTAATCGCCGGCGACACGTGTTCGCGATGCCGAGCCAGACTACCGTCCGAGGAAGCGTTTCTGGGGCACATGGCGCGGCACCATCCCGCGCTGCCCGCGCCCTGCGTCGTCTGTCGCCAGACGCTCGCCTCCGAGGCGGAGGCGCGCCTTCACGCGCGTTTCCATCTGCGCCCCAACGACGATGAGCAGCGCTGCGCCATCTGCCTCCGACCGCTCACCAAGAGCGAGGCCGGCGAGGGAGTGCGGGCGTGCGCCTCCTGCTACGCGCGCCACGCCACGCCGCGGCCCGCGCCCGCCGCCGACCACGACTGCCGGCTGTGCAGGCGCTCGCTCGGCTCGCCCACGCGGCTGCAGGCGCATCTCATCGAGCACACGTTCGCGGGCATCGGTGCCTTCACGTGCTACCTGTGCTCGGCAGTGTTCACGAGCGCCGCGGGCCTGCAGCGCCACCTGCCGGAGCACGCCGCCGCGCCGCGCCCCTACGACTGCGCGCGCTGCGGGCTCAAGTTTTTCTTCCGCGCTGAGCTGGATAACCACGCTTTCGTACATATCGAGGAGGCAGAAATAGCCCAGAGAGCGTTTTACGAGGCTTACGCGCGGGGCGCCGCGTCAGCGTGGGCGGCTCTCGCGCCGCCGCCGCAGGATACGGGCCCTATGCCGTCCGTGTCGGCGCCCGCCCCGCCACCTGCCGCTGAGCATCCTGTTAAAATAGAACCAGAAATAAAAGAAGAACGGAACGCCGAAGAATATATCGAAGTGTCGTCACCTCCGCCCCCCGGCCCCTCCCCTAGCCCTGTCCCCGCGCCGGGCGCCGCGGCGCTGCGCTCCCCCGTGCCGGCGGTGAAGCAGGAGCGGGCGGAGGCGGAGTGA
Protein Sequence: MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRAPRDPRDPRETRDHDRRRTTRCLHCGDAFRRPEMLQAHMATVHGVDAASLTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGDSLMTSTLEQPTPTDLSRRTSDDVPIAKRPKSSSESATPQTALSPSTLLCNQCDAALPDFEAFRAHVKGHLEEGGELSRSSPAPCVHCGATFADVAATERHLAAHYLAVSCEYTCHSCVRSFPTPDDLQKHLFDLHAHHLYRCSLCKEVFDSKVAIQMHHAVMQQTLNGEMVRPKRMDNNNVDGEDACSPCATGVTGAGGAGGAATDSAGVLDERRRKNGAVALQCAYCGERTRSRAELEAHTRAHAGAARHKCLICDEVLPSAGVLAEHKLSHCKVIAGDTCSRCRARLPSEEAFLGHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPNDDEQRCAICLRPLTKSEAGEGVRACASCYARHATPRPAPAADHDCRLCRRSLGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHAAAPRPYDCARCGLKFFFRAELDNHAFVHIEEAEIAQRAFYEAYARGAASAWAALAPPPQDTGPMPSVSAPAPPPAAEHPVKIEPEIKEERNAEEYIEVSSPPPPGPSPSPVPAPGAAALRSPVPAVKQERAEAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01141854;
90% Identity: -
80% Identity: -