Bhed003875.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Byasa hedistus
Gene Symbol
L
Assembly
GCA_029286795.1
Location
JAGSMW010000005.1:6609612-6615016[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.48 51 5.4 5.8 1 23 3 25 3 25 0.97
2 16 6.5e-06 0.00069 20.7 4.1 1 23 31 53 31 53 0.99
3 16 2e-05 0.0021 19.2 0.1 1 23 59 81 59 81 0.98
4 16 0.00047 0.05 14.8 0.0 2 23 97 119 96 119 0.96
5 16 4.6 4.9e+02 2.3 0.1 9 23 150 165 146 165 0.93
6 16 0.18 19 6.7 0.1 3 23 223 243 222 243 0.97
7 16 0.074 7.9 7.9 0.0 3 23 258 278 257 278 0.93
8 16 9.1e-05 0.0096 17.1 0.4 1 23 286 309 286 309 0.91
9 16 0.0088 0.93 10.9 0.1 1 23 314 337 314 337 0.92
10 16 0.00027 0.029 15.6 0.2 1 23 388 412 388 413 0.96
11 16 0.00015 0.016 16.4 0.1 2 23 465 486 464 486 0.96
12 16 0.095 10 7.6 0.0 1 23 492 514 492 514 0.97
13 16 0.53 56 5.3 0.8 2 23 522 543 521 544 0.94
14 16 0.71 75 4.8 0.2 3 23 620 640 619 640 0.95
15 16 0.0027 0.28 12.5 0.1 1 20 648 667 648 670 0.95
16 16 0.03 3.2 9.2 0.6 1 23 677 699 677 699 0.94

Sequence Information

Coding Sequence
ATGCCATTCCGCTGCGAGTTTTGTTCAAGATTGTTCAAGCACAAGCGATCCCGCGACCGCCACGTGAAGCTGCATACCGGCGACCGGAAATACCGTTGCGCACATTGTGAATCTGCTTTTTCTAGAAGTGATCATCTGAAGATCCACATGAAGACCCACGACAATCAAAAGCCGTTCCAATGTACGGTATGTAACCGTGGGTACAACACGGCCGCGGCTCTGACGTCTCACATGCAGGGTCACAAGCGAGACCGCGATGGTCGCGACCAAGACCGGAGACGGACTTTGCGCTGCTTGCAATGCGGCGATGCGTTTCGACGCCCTGAAATGCTTCAGgcCCATATAGCTACAGCACACAGTGTTGACTCGGTATCCTTAACGCCTCCACGGCGCGTCGCTTCGCAGCCGCCGCCGACTCTCCTCGCCTGCATATATTGCACAAGAGATACCTTCACCAGCATGGAACAATTGCAACTACACGTTCGCGCCGCACATTCAGCACTTTTGAACGGTGACACAACAATGCCGTTAAACATAGAACAACCGACACCAACGGACCTCAGTCGGAGAACAAGCGTAGAGCAAGACTCAACAAAAGCAAAGCGTCCACGATCTAGTTCCGGTACTGCTACACCACAAGCAACCTTATCCCCGAGTACTCTACTTTGTAATCAATGCGACGCTGCGTTACCCAATTTTGAAGCATTTAGAGCTCATCTCAAAGGGCATTTACAAGAGGGAGGGGAACTAAACCGCTCCAGTCCTGCGCCATGCGTTCATTGCGGAGCTAGTTTCGCGGATATTGCAGCAACAGAGCGCCATTTAGCAGCACATTACCTGGCAGTCTCCTGCGAGTACACTTGTAACAGTTGTGTGCGCAGTTTTCCTACACCGGatgatttacaaaaacatctgTTTGATTTACATGCTCATCATTTGTACCGTTGTTCATTGTGCAAAGAAGTCTTTGATTCAAAAGTGGCAATTCAGGTGCATTTCGCGGTGGCGCACAGCGGCGAAACCAAGGTGTGGATGTGTCGGCCGTGCGGCGCGAGCGGGGGGGCGATGCGCACGGAGGCGGAGGGGGCAGCGCACGTGCGCACACGGCACGCGGCCGCGCGCTGCGCCTGCGGGGCGGTGTTGCCAGCTCCGCGCCGTGCCTACCGGTGTCCGGCCCCGACCTGCCCTGATAGCTTCGCGGTGCAGTACTTGTTGGAGCGACACATGCAGATACACCATCCTGTGCCACCGCAGGCATTAAACGGCGAAATGGTCCGTGTTAAGCGCGCGGATAACAACAATACAGAAGGTGACGGGACTTGCTCCCCCTGTGTTAGTGGCGAAGCTGGACTGGTTGATGACCGGCGGAGGAAGAACGGCGCCGTAGCCCTCCAGTGCGCGTACTGCGGCGAGCGCACGCGCAGCCGTGCCGAGCTAGAAGCGCATACCCGGGCGCATGCGGGCGCCGCCAGACACAAATGCTTGATCTGTGACGAAGTACTTCCATCTGCTGGAGTTCTTGCTGAACATAAGCTTTCTCATTGCAAGGTCATTGCTGGCGACACATGTTCGCGATGTCGCGCCCGATTGCCAACCGAGGAAGCATTTCTCACTCATATGGCAAGACATCATCCTGCGCTTCCTGCACCTTGCGTGGTTTGCCGTCAAACACTCGCTTCTGAAGCAGAAGCCCGGCTCCACGCCAGATTTCATCTTCGTCCTAATGAAGACGAACAACGTTGCGCAATATGCCTCAGAACATTGACCGAGAGCGAAGCTGGAGAGGGAGTGAGGGCCTGTTCCTCTTGCTATGCTCGTCATTCGACACCGAGACCACCTCCAACGGCCGACAACGATTGCCGACTTTGCAGGCGATCTCTCGGTTCGCCTAATCGTTTACAAGCACATCTCATAGAACATACGTTTGCAGGAATAGGCGCGTTCACGTGCTATTTATGTTCAGCTGTATTTACAAGCGCTGCCGGATTACAGCGACACCTTCCTGAACACGCATCTGCACCGAGACCTTATGACTGCACACGTTGCGGCATGAAGTTCTTCTTTCGCGCTGAGCTTGATAACCATGCTTTTGTGCATATAGAGGAAGCGGAGATAGCCCAGAGAGCCTTTTATGAAGCTTATGCCAGAGGTGCCGTATCGGCATGGGCAGCTCTTGCCCCTCCTGCGGATGCAGCGCCTATGCCATCAGTATCAGGTCCCGTTCCACCTGCTACAGATGTCTCTGTTAAAATAGAACCCGAGATAAAAGAGGAACGACATACTGATGAATATATCGAAGTGTCGTCTCCTCCGCCTTCGGCTCCGCCTCCGCCTCCTCCTCTCCCTGCTTCAACTTCCCCTGCTCCTGTAGTGAAGCAAGAGAAAACCGATGAAGATTGA
Protein Sequence
MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRDGRDQDRRRTLRCLQCGDAFRRPEMLQAHIATAHSVDSVSLTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGDTTMPLNIEQPTPTDLSRRTSVEQDSTKAKRPRSSSGTATPQATLSPSTLLCNQCDAALPNFEAFRAHLKGHLQEGGELNRSSPAPCVHCGASFADIAATERHLAAHYLAVSCEYTCNSCVRSFPTPDDLQKHLFDLHAHHLYRCSLCKEVFDSKVAIQVHFAVAHSGETKVWMCRPCGASGGAMRTEAEGAAHVRTRHAAARCACGAVLPAPRRAYRCPAPTCPDSFAVQYLLERHMQIHHPVPPQALNGEMVRVKRADNNNTEGDGTCSPCVSGEAGLVDDRRRKNGAVALQCAYCGERTRSRAELEAHTRAHAGAARHKCLICDEVLPSAGVLAEHKLSHCKVIAGDTCSRCRARLPTEEAFLTHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPNEDEQRCAICLRTLTESEAGEGVRACSSCYARHSTPRPPPTADNDCRLCRRSLGSPNRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCTRCGMKFFFRAELDNHAFVHIEEAEIAQRAFYEAYARGAVSAWAALAPPADAAPMPSVSGPVPPATDVSVKIEPEIKEERHTDEYIEVSSPPPSAPPPPPPLPASTSPAPVVKQEKTDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01141854;
90% Identity
iTF_01495203;
80% Identity
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