Pmne060267.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Parnassius mnemosyne
Gene Symbol
L
Assembly
GCA_963668995.1
Location
CAVLGL010000137.1:28769123-28781085[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.57 1.2e+02 5.4 5.8 1 23 3 25 3 25 0.97
2 16 7.6e-06 0.0016 20.7 4.1 1 23 31 53 31 53 0.99
3 16 2.4e-05 0.005 19.2 0.1 1 23 59 81 59 81 0.98
4 16 0.00028 0.058 15.8 0.0 2 23 97 119 96 119 0.96
5 16 0.88 1.8e+02 4.8 0.2 9 23 150 165 146 165 0.96
6 16 0.7 1.5e+02 5.1 0.1 3 23 221 241 220 241 0.97
7 16 0.029 6 9.5 0.0 3 23 256 276 255 276 0.93
8 16 0.0017 0.35 13.3 0.7 1 23 284 307 284 307 0.91
9 16 0.01 2.2 10.9 0.1 1 23 312 335 312 335 0.92
10 16 0.021 4.4 9.9 0.5 1 23 389 413 389 414 0.94
11 16 0.00018 0.038 16.4 0.1 2 23 468 489 467 489 0.96
12 16 0.11 23 7.6 0.0 1 23 495 517 495 517 0.97
13 16 6.8 1.4e+03 2.0 0.8 2 23 525 546 524 547 0.92
14 16 0.68 1.4e+02 5.1 0.2 3 23 623 643 622 643 0.95
15 16 0.0031 0.66 12.5 0.1 1 20 651 670 651 673 0.95
16 16 0.12 25 7.5 0.2 1 23 680 702 680 702 0.94

Sequence Information

Coding Sequence
ATGCCATTCCGTTGCGAATTCTGCTCAAGATTGTTCAAGCACAAACGGTCGCGCGATCGTCATGTCAAGTTGCATACTGGCGACCGCAAGTACCGCTGCGCTCACTGCGAATCTGCTTTTTCCAGAAGTGACCATCTGAAAATCCATATGAAGACGCACGATAACCAGAAGCCGTTCCAGTGTACCGTGTGTAACCGCGGGTACAACACAGCCGCGGCGCTCACATCACACATGCAGGGTCACAAACGGGACCGGGAAGGCCGTGATCAAGACCGCCGTCGAACCATGCGGTGCTTGCAATGCGGCGATGCTTTTCGACGCCCTGAAATGCTccaggCTCATATGGCAACAGCTCATGGCGTCGATGCAGCAGCTTTAACTCCACCAAGACGCGTTGCATCTCAACCACCTCCGACCCTTCTCGCCTGTATATACTGCACAAGAGATACGTTCACGAGTATGGAACAATTGCAACTGCACGTCCGCACCGCTCATTCAGCCCTACTGAATGGTGAAACTGCTATGCCTTCGACCATAGAACAGCCAGTTCCAACAGATCTAAGCAGAAGGACAAATGATGATGTCACAACAGCAAAACGCCCGAGATCTGGTTCCGGATCAGCCACGCCTCAGACATCTATGTCACCGAGTACTCTACTCTGCAATCAGTGTGACGCAGCCTTACCAGATTTTGAAGCTTTCAGACTTCATCTCAAAGGTCATCTTGAAGAAGGAGGTGAACATAACCGTACCAGTCCCGCGCCTTGTGTTCACTGCGGAGCTAGTTTTACGGACGTTGCTGCAACGGAACGCCATTTAGCAGCACATTATCTGGCAGTTTCCTGCGAATATACTTGCCACAGTTGTGTACGCAGTTTCCCCGCACCGGATGACTTGCAAAAACACCTCTTTGACTTGCATGCACACCACTTGTACCGTTGTTCACTCTGCAAAGAAGTCTTCGATTCAAAAGTGGCTATTCAGGTGCACTTCGCGGTCGCACACAGCGGCGAAAGTAAGGTGTGGATGTGCCGTCCCTGCGGCGGCAGCGCGGGCGCGATGCGCTCGGAGGCGGAGGGTGCGGCGCACGTGCGCGCGCGGCACGCGGCGGCGCGCTGCGGCTGCGGCGCCGCGCTGCCCGCGCCGCCCGCGCTCCGCCGCCCCTACCGCTGCCCCGCACCCGCCTGCGCACACACCTTCGCAGTGCAGTACCTGCTCGAGCGCCACGTGCAATTGCACCACGCCGTCGCGCAACAGACATTAAACGGAGAAATGGTCCGTCCGAAGCGTGCGGATAATAACAACGTGGTGGACAGCGGTGACGGGGCGTGCACGCCGTGTGTGAGCGGAGAGGGCGGGCTTAGCGAGGAGCGCAGACGCAAGAACGGCGCGGTGGCGCTGCAGTGCGCGTACTGCGGCGAGCGCACGCGCAGCCGCGCCGAGCTGGAGgcgcacacgcgcgcgcacgccgGCGCCGCGCGCCACAAGTGCCTCATCTGCGACGAGGTGCTGCCTTCCGCCGGCGTGCTGGCCGAGCACAAGCTCTCACATTGCAaggttattgcCGGCGACACATGTTCACGATGCCGGGCAAGACTGCCCTCTGAAGAAGTATTCCTCACTCATATGGCACGACATCATCCCACGCTACCAGCTCCTTGCGTTGTTTGTCGCCAAACGCTGGCTTCTGAAGCAGAAGCCCGACTTCACGCTCGTTTCCATTTACGTCCAAATGAAGACGAACAACGATGCGCGATATGTCTAAGAGCTTTATCTGAGAGTGAGGCTGGTGAGGGAGTGAGAGCGTGCTCCGCCTGTTACGTTCGTCATTCTACGCCGAGACCTCCTCCGACCGCTGACAATGACTGTCGACTTTGCAGAAGATCCCTCGGCTCACCAACTCGCCTACAAGCACATCTTATTGAACACACATTCGCAGGAATTGGAGCCTTCACGTGCTATCTGTGTTCGGCTGTGTTTACAAGTGCAGCAGGCTTGCAACGACATCTCCCAGAACATGCATCCGCGCCACGCCCTTACGATTGCGCTCGTTGTGGAATAAAGTTCTTCTTTCGCGCTGAGCTCGACAACCACGCCTTCGTACATATCGAGGAGGCGGAACTAGCTCAGAGAGCCTTCTACGAAGCTTACGCGAGGGGCGCCGCATCTGCATGGGCGGCTCTAGCTCCACCATCAGAAAATACGCCCATGCCGTCAGCATCAGGTCCTGTAACACCTGGATCAGAAGTTCCAGTGAAAGTAGAGCCTGATATCAAAGAAGAACGTAACATTGAAGAATATATCGAAGTATCCTCGCCTCCCCCTTCTGCCCCGCCACCTCAGCAGCCGACTGCGACATCACCGGCCCCCGTAGTAAAGCAAGAAAAACCCGACGAAGAATGA
Protein Sequence
MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGRDQDRRRTMRCLQCGDAFRRPEMLQAHMATAHGVDAAALTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRTAHSALLNGETAMPSTIEQPVPTDLSRRTNDDVTTAKRPRSGSGSATPQTSMSPSTLLCNQCDAALPDFEAFRLHLKGHLEEGGEHNRTSPAPCVHCGASFTDVAATERHLAAHYLAVSCEYTCHSCVRSFPAPDDLQKHLFDLHAHHLYRCSLCKEVFDSKVAIQVHFAVAHSGESKVWMCRPCGGSAGAMRSEAEGAAHVRARHAAARCGCGAALPAPPALRRPYRCPAPACAHTFAVQYLLERHVQLHHAVAQQTLNGEMVRPKRADNNNVVDSGDGACTPCVSGEGGLSEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHAGAARHKCLICDEVLPSAGVLAEHKLSHCKVIAGDTCSRCRARLPSEEVFLTHMARHHPTLPAPCVVCRQTLASEAEARLHARFHLRPNEDEQRCAICLRALSESEAGEGVRACSACYVRHSTPRPPPTADNDCRLCRRSLGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGIKFFFRAELDNHAFVHIEEAELAQRAFYEAYARGAASAWAALAPPSENTPMPSASGPVTPGSEVPVKVEPDIKEERNIEEYIEVSSPPPSAPPPQQPTATSPAPVVKQEKPDEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01141854;
90% Identity
iTF_01158140;
80% Identity
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