Basic Information

Insect: Troides rhadamantus
Gene Symbol: L
Assembly: GCA_018246435.1
Location: DWLU01006241.1:6590-9662[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2e-05 0.0052 19.3 0.1 1 23 10 32 10 32 0.98

2 14 0.00047 0.12 15.0 0.0 2 23 48 70 47 70 0.96

3 14 4.6 1.2e+03 2.4 0.1 9 23 101 116 97 116 0.93

4 14 0.23 60 6.5 0.0 3 23 174 194 173 194 0.97

5 14 0.074 19 8.0 0.0 3 23 209 229 208 229 0.93

6 14 9.1e-05 0.023 17.2 1.2 1 23 237 260 237 260 0.91

7 14 0.025 6.4 9.5 0.1 1 23 265 288 265 288 0.92

8 14 0.0002 0.052 16.1 0.2 1 23 339 363 339 364 0.96

9 14 0.00015 0.039 16.5 0.1 2 23 415 436 414 436 0.96

10 14 0.095 24 7.7 0.0 1 23 442 464 442 464 0.97

11 14 1.3 3.3e+02 4.2 0.5 2 23 472 493 471 494 0.93

12 14 0.65 1.7e+02 5.1 0.2 3 23 570 590 569 590 0.95

13 14 0.0027 0.69 12.6 0.1 1 20 598 617 598 620 0.95

14 14 0.03 7.8 9.3 0.6 1 23 627 649 627 649 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2e-05	0.0052	19.3	0.1	1	23	10	32	10	32	0.98
2	14	0.00047	0.12	15.0	0.0	2	23	48	70	47	70	0.96
3	14	4.6	1.2e+03	2.4	0.1	9	23	101	116	97	116	0.93
4	14	0.23	60	6.5	0.0	3	23	174	194	173	194	0.97
5	14	0.074	19	8.0	0.0	3	23	209	229	208	229	0.93
6	14	9.1e-05	0.023	17.2	1.2	1	23	237	260	237	260	0.91
7	14	0.025	6.4	9.5	0.1	1	23	265	288	265	288	0.92
8	14	0.0002	0.052	16.1	0.2	1	23	339	363	339	364	0.96
9	14	0.00015	0.039	16.5	0.1	2	23	415	436	414	436	0.96
10	14	0.095	24	7.7	0.0	1	23	442	464	442	464	0.97
11	14	1.3	3.3e+02	4.2	0.5	2	23	472	493	471	494	0.93
12	14	0.65	1.7e+02	5.1	0.2	3	23	570	590	569	590	0.95
13	14	0.0027	0.69	12.6	0.1	1	20	598	617	598	620	0.95
14	14	0.03	7.8	9.3	0.6	1	23	627	649	627	649	0.94

Sequence Information

Coding Sequence: ATGAAGACCCACGACAATCAAAAGCCATTCCAGTGTACTGTATGCAACCGTGGATACAATACAGCCGCGGCTCTGACGTCCCACATGCAGGGCCACAAGAGAGACCGCGATGGCCGCGACCAAGACCGCCGGAGGACTTTGCGCTGCTTGCAATGCGGCGATGCTTTTCGACGCCCTGAAATGCTTCAGgcCCATATAGCTACAGCACACGGCGTTGACTCAGTATCATTAACTCCTCCACGGCGCGTTGCTTCCCAGCCGCCACCCACTCTCCTCGCCTGCATATATTGCACAAGAGATACATTCACCAGTATGGAACAACTGCAACTGCACGTTCGCGCCGCACATTCAGCACTATTAAACGGTGACATTACAATGCCGACAAATATAGAGCAACCAACGCCAACGGATCTCAGTCGGAGAACAAGTGTAGAACAAGATCCAACAACAGCGAAGCGTCCACGATCTAGTTCCGGTACTGCTACACCACAGACAACGTTATCCCCGAACACTCTTCTTTGCAACCAGTGTGATGCTGCGTTACCAGATTTTGAAGCGTTTAGAGCTCACCTCAAAGGGCATTTAGAACAGGGAGGAGAACTAAACCGCTCCAGTCCAGCCCCTTGCGTtcattgtggcgctagttttgCGGACATTGCAGCAACAGAGCGCCATTTAGCAGCACATTATCTGGCAGTATCATGCGAGTACACTTGCCACAGCTGCGTGCGCAGTTTCCCGACACCGGATGACTTACAAAAACATCTATTTGATTTACATGCTCATCATTTGTATCGCTGTTCACTGTGCAAGGAAATCTTTGATTCTAAAGTAGCAATTCAGGTGCATTTCGCGGTAGCTCACAGCGGCGAAACGAAGGTGTGGATGTGTCGCCCGTGCGGCGCAAGCGGTGGAGCGATGCGCACGGAAGCGGAAGGAGCAGCTCACGTGCGCGCACGGCACGCGGCGGCCCGCTGCCCCTGCGGAGCGGTGTTGCCAGCGCCGCGTCGCGCTTATCGGTGCCCAGCCCCTACCTGCCCCGATAGCTTCGCAGTGCAGTATTTGTTAGAGAGACATATGCAGATGCATCATCCTGTGCCACAAGCATTAAACGGAGAAATCGTTCGCGGCAAGCGCGCGGATAACAACAATACAGAAGGAGACGGAACGTGCTCGCCGTGTGTTAGTGGTGAACCTGGATTAGTTGATGACCGGCGGAGGAAGAACGGTGCGGTAGCCCTACAGTGCGCGTACTGCGGCGAGCGCACGCGCAGCCGGGCGGAGCTAGAGGCGCACACCCGAGCGCATGCCGGTGCCGCCAGACACAAATGCTTAATCTGTGACGAAGTTCTTCCATCAGCTGGAGTCCTAGCTGAACATAAGCTCTCACATTGCAAGGTTATTGCTGGTGACACGTGCGCGCGATGTCGCGCCCGATTGCCTACCGAAGAAGCATTTCTTACTCATATGGCAAGGCAtcatcctgcgctgcctgcaccTTGCGTGGTTTGCCGGCAAACACTTGCGTCTGAAGCGGAAGCTCGGCTTCACGCTCGATTTCATCTTCGCCCAAATGAAGATGAACAACGGTGTGCAATATGTCTTAGAACATTGACGGAGAGCGAAGCCGGAGAGGGGGTGAGGGCTTGTTCCACTTGTTATGCTCGTCATTCGACACCGAGACCACCTCCAACAGCCGATAACGATTGTCGACTTTGTAGGCGAACTCTCGGGTCGCCGACTCGACTACAAGCTCACCTCATAGAACACACATTCGCAGGAATAGGCGCGTTCACGTGCTATTTATGTTCTGCTGTGTTTACAAGCGCTGCCGGTTTACAACGACACCTTCCTGAACATGCATCCGCACCGAGACCTTACGACTGCACGCGTTGCGGCATGAAGTTCTTTTTCCGCGCTGAACTCGATAACCATGCTTTTGTACATATAGAAGAAGCGGAGATAGCACAAAGAGCGTTTTATGAAGCTTACGCCAGAGGTGCCGCATCAGCATGGGCAGCCCTTGCTCCACCTCCAGATGCTACGCCTATGCCTTCAATAGCAGGTCCCGTTCCACCTGCTACAGATGTCTCTGTTAAAACAGAACCAGAGATAAAAGAGGAACGACCTATTGAGGAATATATTGAAGTGTCATCTCCTCCACCATCTGCACCGCCCCCTGCTCCCCCCGCTTCAACTTCTCCTGCTCCTGTAGTTAAGCAAGAGAAGACCGACGAAGACTGA
Protein Sequence: MKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRDGRDQDRRRTLRCLQCGDAFRRPEMLQAHIATAHGVDSVSLTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGDITMPTNIEQPTPTDLSRRTSVEQDPTTAKRPRSSSGTATPQTTLSPNTLLCNQCDAALPDFEAFRAHLKGHLEQGGELNRSSPAPCVHCGASFADIAATERHLAAHYLAVSCEYTCHSCVRSFPTPDDLQKHLFDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGETKVWMCRPCGASGGAMRTEAEGAAHVRARHAAARCPCGAVLPAPRRAYRCPAPTCPDSFAVQYLLERHMQMHHPVPQALNGEIVRGKRADNNNTEGDGTCSPCVSGEPGLVDDRRRKNGAVALQCAYCGERTRSRAELEAHTRAHAGAARHKCLICDEVLPSAGVLAEHKLSHCKVIAGDTCARCRARLPTEEAFLTHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPNEDEQRCAICLRTLTESEAGEGVRACSTCYARHSTPRPPPTADNDCRLCRRTLGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCTRCGMKFFFRAELDNHAFVHIEEAEIAQRAFYEAYARGAASAWAALAPPPDATPMPSIAGPVPPATDVSVKTEPEIKEERPIEEYIEVSSPPPSAPPPAPPASTSPAPVVKQEKTDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01141854;
90% Identity: iTF_01495203;
80% Identity: -