Timp012169.1
Basic Information
- Insect
- Teinopalpus imperialis
- Gene Symbol
- L
- Assembly
- GCA_029286865.1
- Location
- JAGSMU010000020.1:7359782-7367957[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.48 54 5.4 5.8 1 23 3 25 3 25 0.97 2 15 6.5e-06 0.00072 20.7 4.1 1 23 31 53 31 53 0.99 3 15 2e-05 0.0022 19.2 0.1 1 23 59 81 59 81 0.98 4 15 0.00076 0.084 14.2 0.1 2 23 97 119 96 119 0.96 5 15 0.23 26 6.4 0.0 3 23 221 241 220 241 0.97 6 15 0.068 7.6 8.1 0.0 3 23 256 276 255 276 0.93 7 15 9.1e-05 0.01 17.1 1.2 1 23 284 307 284 307 0.91 8 15 0.025 2.8 9.4 0.1 1 23 312 335 312 335 0.92 9 15 0.017 1.9 9.9 0.1 1 23 386 410 386 411 0.95 10 15 0.00015 0.017 16.4 0.1 2 23 463 484 462 484 0.96 11 15 0.095 11 7.6 0.0 1 23 490 512 490 512 0.97 12 15 0.72 80 4.8 0.7 2 23 520 541 519 542 0.94 13 15 0.58 64 5.1 0.2 3 23 618 638 617 638 0.95 14 15 0.0046 0.51 11.7 0.4 1 20 646 665 646 668 0.95 15 15 0.087 9.7 7.7 0.3 1 23 675 697 675 697 0.94
Sequence Information
- Coding Sequence
- ATGCCGTTTCGCTGCGAGTTTTGTTCGAGATTGTTCAAACATAAGCGCTCGCGCGACCGGCACGTCAAGCTGCACACCGGCGATCGCAAATACCGCTGCGCTCATTGCGAATCCGCTTTTTCCAGGAGCGACCATCTAAAGATTCACATGAAGACACACGACAACCAGAAGCCCTTCCAGTGTACGGTGTGTAACCGGGGGTACAACACGGCTGCAGCGCTGACCTCACACATGCAGGGTCACAAACGTGACCGGGAGGGTCGCGACCACGACCGCAGGAGAACCTTACGATGCTTGCAATGTGGCGACGCGTTTCGACGCCCAGAAATGCTACAGGCTCACCTGGCCACATCTCACGGAATCGACGCAGCCTCCTTGACTCCGCCACGGCGTGTGGCTTCACAACCGCCGCCGACTCTCCTCGCGTGTATATACTGCACACGAGATACCTTCACTAGCATGGAACAATTGCAATTGCACGTTCACGCTGCTCATTCAGCTCTATTAAACGGCGATGCAACAGTACCATCAACCATCGATGAACCAATGCCAACGGATCTCAGTCAAAGAACTAGTGATGACGTCACAATAGCAAAACGTCCGCGATCTAGTACCGGTTCTGCTACGCCACAAACGACTCTGTCTCCCAATACTCTATTATGCAATCAGTGTGACGCAGCCTTGCCCGACTTTGAGGCATTTCGAGCTCACCTCAAAGGCCATCTCGAAGAGGGAGGAGAACTTAGCCGTACTAGTCCAGCGCCATGTGTTCATTGCGGTGCTAGTTTCGCGGACGTGGCAGCAACAGAGCGCCATCTAGCTGCACACTATCTGGCAGTGTCTTGCGAGTACACTTGCCACAGTTGCGTGCGAAGTTTCCCAACACCTGACGACTTGCAAAAACATCTCTTCGATTTGCACGCTCACCATTTGTATCGCTGTTCACTGTGCAAGGAAATCTTCGATTCGAAAGTGGCTATACAGGTGCATTTCGCGGTGGCACACAGCGGCGAAAGCAAAGTATGGATGTGTCGTCCGTGCGGTGCTAGTGGGGGGGCGATGCGGTCCGAGGCAGAGGGAGCTGCCCACGTGCGCGCCAGACACGCAGCTGCGCGGTGCGCATGCGGAGCAGTGCTGCCCGCTCCGCGCCGTGCGTACCGCTGCCCGGCACCAAACTGTGCAGATAGCTTCGCAGTCCAGTACCTCTTGGAGCGGCATGTGCAAATCCATCATGCCGTCGCGCAGactttGAATGGAGAAATGGTACGCCCAAAGCGTGCTGATAACAACAACGTGGAGGTCGACGGGGTGTGTTCGCCGTGCGTCAGCAACGATGGTCCCGGACACTTAGACGAACGACGGAGGAAAAACGGAGCAGTTGCTCTGCAGTGTGCCTACTGCGGGGAGAGGACACGCAGCCGGGCAGAGCTAGAGGCGCACACTCGAGCACACGCCGGTGCCGCGCGACACAAGTGCCTGATCTGCGACGAGGTGCTGCCATCTGCGGGGGTACTGGCTGAGCATAAGCTCTCACACTGCAAGGTTATTGCTGGTGATACATGTTCACGATGCCGAGCCAGATTACCATCTGAAGAAGCTTTCCTCACCCATATGGCACGGCATCACCCCGCACTACCAGCGCCTTGCGTCGTCTGCCGCCAGACACTAGCGTCAGAAGCAGAGGCCCGACTTCACGCTCGCTTCCACCTTCGCCCAAATGAAAATGAACAACGGTGCGCCATATGCCTTAGAGCTTTATCTGAGAGCGAAACTGGAGAAGGAGTCAGAGCCTGCTCCGCTTGTTACGCCCGTCACTCCACGCCGAGGCCTCCTCCAACTGCTGACAATGACTGTCGACTATGCAGACGTTCCCTCGGGTCGCCAACGCGATTACAAGCACATCTCATAGAGCATACCTTCGCAGGAATTGGCGCCTTCACGTGCTATCTATGTTCTGCTGTGTTTACAAGTGCCGCTGGTTTACAGCGACACCATCCCGAACACGCCTCTGCACCGCGGCCTTATGACTGCGCTCGTTGTGGAATGAAATTCTTCTTCCGCGCTGAGCTGGACAACCACGCTTTTGTACATATCGAAGAGGCAGAAATAGCTCAGAGAGCGTTCTATGAAGCTTACGCACGTGGTGCCGCGTCGGCGTGGGCGGCACTCGCTCCGCCGCCTGAGTCTACGCCTATACCGTCAGTAGCAAGTCACGCACCATCAGGTTCGGAAATTCCAGTGAAAATAGAGCCGGagataaaagaagaaagaaacgCTGATGAATATATAGAAGTTTCTTCGCCTCCGCCCGCCCCGCCGCCGCCACCTTCAGCTTCGACCTCTCCTGCACCGATAGTGAAACAAGAAAAACCCGACGAAGACTGA
- Protein Sequence
- MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGRDHDRRRTLRCLQCGDAFRRPEMLQAHLATSHGIDAASLTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVHAAHSALLNGDATVPSTIDEPMPTDLSQRTSDDVTIAKRPRSSTGSATPQTTLSPNTLLCNQCDAALPDFEAFRAHLKGHLEEGGELSRTSPAPCVHCGASFADVAATERHLAAHYLAVSCEYTCHSCVRSFPTPDDLQKHLFDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGESKVWMCRPCGASGGAMRSEAEGAAHVRARHAAARCACGAVLPAPRRAYRCPAPNCADSFAVQYLLERHVQIHHAVAQTLNGEMVRPKRADNNNVEVDGVCSPCVSNDGPGHLDERRRKNGAVALQCAYCGERTRSRAELEAHTRAHAGAARHKCLICDEVLPSAGVLAEHKLSHCKVIAGDTCSRCRARLPSEEAFLTHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPNENEQRCAICLRALSESETGEGVRACSACYARHSTPRPPPTADNDCRLCRRSLGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHHPEHASAPRPYDCARCGMKFFFRAELDNHAFVHIEEAEIAQRAFYEAYARGAASAWAALAPPPESTPIPSVASHAPSGSEIPVKIEPEIKEERNADEYIEVSSPPPAPPPPPSASTSPAPIVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141854;
- 90% Identity
- iTF_00923049;
- 80% Identity
- -