Pmac013532.1
Basic Information
- Insect
- Papilio machaon
- Gene Symbol
- L
- Assembly
- GCA_001298355.1
- Location
- NW:182028-197116[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.3e-06 0.00029 20.8 3.5 1 23 91 113 91 113 0.99 2 17 0.45 24 5.3 5.8 1 23 119 141 119 141 0.97 3 17 6.1e-06 0.00033 20.6 4.1 1 23 147 169 147 169 0.99 4 17 1.9e-05 0.001 19.0 0.1 1 23 175 197 175 197 0.98 5 17 7.8e-05 0.0042 17.1 0.2 2 23 222 244 221 244 0.96 6 17 4.3 2.3e+02 2.2 0.1 9 23 275 290 271 290 0.93 7 17 0.44 24 5.3 0.0 3 23 346 366 345 366 0.97 8 17 0.07 3.8 7.8 0.0 3 23 381 401 380 401 0.93 9 17 8.6e-05 0.0046 17.0 1.2 1 23 409 432 409 432 0.91 10 17 0.0082 0.44 10.7 0.1 1 23 437 460 437 460 0.92 11 17 0.0016 0.087 13.0 0.1 1 23 503 527 503 528 0.94 12 17 0.00014 0.0077 16.3 0.1 2 23 540 561 539 561 0.96 13 17 0.089 4.8 7.5 0.0 1 23 567 589 567 589 0.96 14 17 3.2 1.7e+02 2.6 0.4 2 23 597 618 596 619 0.93 15 17 0.25 13 6.1 0.3 1 23 696 718 696 718 0.94 16 17 0.0025 0.13 12.4 0.1 1 20 726 745 726 748 0.95 17 17 0.11 5.9 7.2 0.3 1 23 755 777 755 777 0.94
Sequence Information
- Coding Sequence
- ATGATCATGCTGTTCAAAGGCAACAGCAGTCGCCTGGAGCATCTCATAGAGAAAATACAGGCCAACAAGGAGAACCACGACGTCACCACTGACGACATAAAAGAGGCATTGGGCAGTGTGGGCAGTGTGGGCAGCACGGCGGGCAGCTCGTGGCCGTCGTCAGCGGAGCCGTCACCCTCGCCGGCGTCGACACCGACCTCCGCGGACGCGCCCGACGGCGACGCAGACGGCGAGCCGCCCTACACGCTCGGCGCCACTGAGCACACGCCCTACCAGTGCCCCTTCTGCGACAAGGCCTTCCCTAGGCACTTCTATCTCAAGAAGCATGAGCAGACGCACTCAGACCAGATGCCGTTCCGATGCGAGTTCTGTTCGCGACTGTTCAAGCACAAGCGGTCGCGTGACCGGCACGTCAAGCTTCACACCGGCGATCGCAAGTACCGCTGCGCTCACTGCGAGTCCGCATTCTCCAGAAGTGACCATCTGAAAATCCACATGAAGACGCATGACAATCAGAAGCCGTTCCAGTGCACGGTGTGCAACCGCGGCTACAACACGGCGGCCGCGCTCACTTCGCACATGCAGGGCCACAAGCGCGACCGTGCGACCCGCGACCCGCGCGACCCTCGCGAGACCAGAGACCACGACCGCCGCAGGACCACGCGCTGCCTACATTGCGGAGACGCTTTTCGAAGACCTGAAATGCTTCAGGCCCATATGGCGACAGCGCATGGCGTGGACGCGACTTCCCTGACTCCACCGCGTCGCGTCGCCTCCCAGCCGCCGCCGACGCTGCTCGCATGCATCTACTGCACCCGGGACACCTTCACCAGCATGGAGCAGCTGCAACTACACGTCCGTGCGGCACACTCCGCGCTGCTCAATGGCGATACCATAATGCCCCCGGCCGTCGAGCAACCGACGCCTACGGACCTCAGTCGGAGAACTAGCGATGACGTCACAATCGCGAAACGTCCCAAGTCAAGCTCGGAGTCGGCAACGCCGCAAACGTCGCTATCTCCGAGTACACTCTTGTGTAATCAGTGCGACGCAGCCTTACCAGATTTCGAAGCTTTTAGAGCTCATGTGAAAGGGCACCTCGAGGAAGGCGGTGAGCTGAGTCGCTCGAGCCCCGCGCCCTGCGTGCACTGCGGCGCTACATTCGCGGACGTGGCGGCGACGGAGCGCCACTTGGCGGCGCACTACCTCGCCGTCTCCTGCGAGTACACCTGCCACAGCTGCGTGCGCAGCTTCCCCACGCCGGACGACTTGCAGAAACATCTCTTCGATCTACACGCTCATCATTTGTATCGCTGTTCTCTTTGTAAAGAAGTCTTCGATTCCAAAGTAGCTATTCAGGTGCATTTCGCGGTGGCGCACAGCGGCGAGAGCAAGGTGTGGGTATGCCGGCCGTGCGGCGCGGGGGGTGCAGGAGCGCACGTGCGAGCACGACACGGAGGCGCGCGGTGCCGCTGCGGGGCGCTGCTGGCCGCGCCGCGCAGACACTACCGCTGCCCCGCGCCCGCCTGCCCCGACACCTTCGCCGTCCAGTACCTGCTCGAGAGGCACATGCAGATGCACCATGCCGTCATGCAACAGAATGGTGCGGTGGCGCTGCAGTGCGCGTACTGCGGGGAGCGCACGCGCAGCCGCGCCGAGCTCGAGGCGCACACGCGCGCGCACGCCGGCGCCGCGCGGCACAAGTGTCTCATCTGCGATGAGGTGCTACCCTCCGCGGGGGTGCTGGCAGAACATAAGCTTTCGCACTGCAAGGTCATAGCCGGAGACACGTGTTCACGATGCCGAGCGAGGCTCCCGTCCGAGGAAGCGTTCCTGGGCCACATGGCGCGGCACCACCCCGCGCTGCCCGCGCCCTGCGTCGTCTGCCGCCAGACGCTCGCCTCCGAGGCTGAGGCGCGCCTCCACGCGCGTTTCCATCTGCGTCCGAACGACGACGAGCAGCGCTGCGCGATCTGCCTCAGGCCGCTCACTATGGGCGAGGCGGGGGAGGGGGTGCGGGCGTGCTCCTCGTGCTAcgcgcgccacgccacgcccCGTGCCGCGCCCTCCGCGCCCCCCGCCGACCACGACTGCCGGCTGTGCAGGCGCTCGCTGGGCTCGCCGGCGCGGCTGCAGGCGCACCTCATCGAGCACACGTTCGCGGGTATCGGCGCGTTCACGTGCTACCTGTGCTCGGCGGTGTTCACGAGCGCCGCGGGCCTGCAGCGCCACCTGCCCGAGcacgccgccgcgccgcgccccTACGACTGCGCGCGCTGCGGACTCAAATTTTTCTTCCGCGCCGAACTAGACAACCACGCTTTTGTGCACATCGAGGAGGCGGAAATAGCGCAGAGGGCGTTTTACGAAGCATACGCGAGGGGCGCCGCGTCGGCGTGGGCGGCCCTCGCCCCGCCGCCGCCGGACGCGGCGCCCACGTCCTCCGCCGCTGAGCCTCCGGTTAAAACGGAACCGGAAATAAAAGAAGAACGGAATGGCGAGGAATATATAGAAGTGTCGTCACCAGCGCCCCCCGCCGCCGCGGCGGTGAAGCAGGAGCGCGCGGAGGTGGACTGA
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHDVTTDDIKEALGSVGSVGSTAGSSWPSSAEPSPSPASTPTSADAPDGDADGEPPYTLGATEHTPYQCPFCDKAFPRHFYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRATRDPRDPRETRDHDRRRTTRCLHCGDAFRRPEMLQAHMATAHGVDATSLTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGDTIMPPAVEQPTPTDLSRRTSDDVTIAKRPKSSSESATPQTSLSPSTLLCNQCDAALPDFEAFRAHVKGHLEEGGELSRSSPAPCVHCGATFADVAATERHLAAHYLAVSCEYTCHSCVRSFPTPDDLQKHLFDLHAHHLYRCSLCKEVFDSKVAIQVHFAVAHSGESKVWVCRPCGAGGAGAHVRARHGGARCRCGALLAAPRRHYRCPAPACPDTFAVQYLLERHMQMHHAVMQQNGAVALQCAYCGERTRSRAELEAHTRAHAGAARHKCLICDEVLPSAGVLAEHKLSHCKVIAGDTCSRCRARLPSEEAFLGHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPNDDEQRCAICLRPLTMGEAGEGVRACSSCYARHATPRAAPSAPPADHDCRLCRRSLGSPARLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHAAAPRPYDCARCGLKFFFRAELDNHAFVHIEEAEIAQRAFYEAYARGAASAWAALAPPPPDAAPTSSAAEPPVKTEPEIKEERNGEEYIEVSSPAPPAAAAVKQERAEVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141854;
- 90% Identity
- -
- 80% Identity
- -