Ppol007767.1
Basic Information
- Insect
- Papilio polyxenes
- Gene Symbol
- L
- Assembly
- GCA_026167825.1
- Location
- JAOPJD010000012.1:4772081-4776355[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.48 42 5.3 5.8 1 23 3 25 3 25 0.97 2 16 6.4e-06 0.00057 20.7 4.1 1 23 31 53 31 53 0.99 3 16 2e-05 0.0018 19.1 0.1 1 23 59 81 59 81 0.98 4 16 8.2e-05 0.0072 17.2 0.2 2 23 106 128 105 128 0.96 5 16 4.6 4e+02 2.3 0.1 9 23 159 174 155 174 0.93 6 16 0.47 41 5.4 0.0 3 23 230 250 229 250 0.97 7 16 0.073 6.5 7.9 0.1 3 23 265 285 264 285 0.93 8 16 9e-05 0.008 17.1 1.2 1 23 293 316 293 316 0.91 9 16 0.0087 0.76 10.8 0.1 1 23 321 344 321 344 0.92 10 16 0.0017 0.15 13.0 0.1 1 23 403 427 403 428 0.94 11 16 0.00015 0.013 16.4 0.1 2 23 499 520 498 520 0.96 12 16 0.094 8.3 7.6 0.0 1 23 526 548 526 548 0.97 13 16 3.4 3e+02 2.7 0.4 2 23 556 577 555 578 0.93 14 16 0.26 23 6.2 0.3 1 23 655 677 655 677 0.94 15 16 0.0027 0.23 12.4 0.1 1 20 685 704 685 707 0.95 16 16 0.12 10 7.3 0.3 1 23 714 736 714 736 0.94
Sequence Information
- Coding Sequence
- ATGCCGTTCCGATGCGAGTTTTGTTCGCGACTGTTCAAGCACAAGCGGTCGCGTGACCGGCACGTCAAGCTTCACACCGGCGATCGCAAGTACCGCTGCGCTCACTGCGAGTCCGCATTCTCCAGAAGTGACCATCTGAAAATCCACATGAAGACGCATGACAATCAGAAGCCGTTCCAGTGCACGGTGTGCAACCGCGGCTACAACACGGCGGCCGCGCTCACTTCGCATATGCAGGGCCACAAGCGCGACCGTGCGACCCGCGACCCGCGCGACCCTCGCGAGACCAGAGACCACGACCGCCGTAGGACCACGCGCTGCCTACATTGCGGAGACGCTTTTCGGAGACCGGAAATGCTTCAGGCCCATATGGCGACAGCGCATGGCGTGGACGCGGCTTCCCTGACTCCACCGCGTCGCGTCGCCTCCCAGCCGCCGCCGACGCTGCTCGCATGCATCTACTGCACCCGGGATACCTTTACCAGCATGGAGCAGCTGCAACTACACGTCCGTGCGGCACACTCCGCGCTGCTCAATGGCGATACCATAATGCCCCCGGCCGTCGAGCAACCGACGCCTACGGACCTCAGTCGGAGAACTGGCGATGACGTCACAATCGCGAAACGTCCCAAGTCAAGCTCGGAATCGGCAACGCCGCAAACGTCGCTATCTCCGAGTACACTCTTATGTAATCAGTGCGACGCAGCCTTACCAGATTTCGAAGCTTTTAGAGCTCATGTGAAAGGGCACCTCGAGGAAGGCGGTGAGCTGAGTCGCTCGAGCCCCGCGCCCTGCGTGCACTGCGGCGCTACATTCGCGGACGTGGCGGCGACGGAGCGACACTTGACGGCGCACTACCTCGCCGTCTCCTGCGAGTACACCTGCCACAGCTGCGTGCGCAGCTTCCCCACGCCGGACGATTTGCAGAAACATCTCTTCGATCTACACGCTCATCATTTGTATCGCTGTTCTCTTTGTAAAGAAGTCTTCGATTCCAAAGTAGCTATTCAGGTGCATTTCGCGGTGGCGCACAGCGGCGAGAGCAAGGTGTGGGTGTGCCGGCCGTGCGGCGCGGGGGGTGCAGGGGGTGCGGGGGGTGCGGGGGGCACGATGCGGTCGGAGGCAGAGGGTGCGGCGCACGTGCGGGCGCGACACGGAGGCGCGCGGTGCCGCTGCGGGGCGCTGCTGGCCGCGCCGCGCAGACACTACCGCTGCCCCGCGCCCGCCTGCCCCGACACCTTCGCCGTCCAGTACCTGCTCGAGAGGCACATGCAGATGCACCATGCCGTCATGCAACAGACATTGAACGGCGAAATGATCCGTCCGAAGCGCTTGGACAACAACAATGTGGAGGGCGAGGAGGCGTGCTCGCCGTGCGCGGGGGGCGCGGCGGGCGCTGGGGTCGTTGGGGGCACGGGGGGCGCGGGGGGTGCTTTAGGCGACGGCGCTGGTGTAGCCGACGAGCGGCGCAGGAAGAATGGTGCGGTGGCGCTGCAGTGCGCCTACTGCGGGGAGCGCACGCGCAGCCGCGCCGAGCTCGAGGCGCACACGCGCGCGCACGCCGGCGCCGCACGGCACAAGTGTCTCATCTGCGATGAGGTGCTACCCTCCGCGGGGGTGCTGGCAGAACATAAGCTATCGCACTGCAAGGTCATAGCCGGAGACACGTGTTCACGATGCCGAGCGAGGCTCCCGTCCGAGGAAGCGTTCCTGGGGCACATGGCGCGGCACCACCCCGCGTTGCCCGCGCCCTGCGTCGTCTGTCGCCAGACGCTCGCCTCCGAGGCCGAGGCGCGCCTCCACGCGCGTTTCCATCTGCGTCCGAACGACGACGAGCAGCGCTGCGCGATCTGCCTCAGGCCGCTCACTATGGGCGAGGCGGGGGAGGGGGTGCGGGCGTGCTCCTCGTGCTACGCGCGCCATGCCACGCCCCGCGCCGCGCCCGCCGCGCCCCCCGCCGACCACGACTGCCGGCTGTGCAGGCGCTCGCTCGGCTCGCCCGCGCGGCTGCAGGCGCACCTCATCGAGCACACGTTCGCGGGTATCGGCGCGTTCACGTGCTACCTGTGCTCGGCGGTGTTCACGAGCGCCGCGGGCCTGCAGCGCCACCTGCCGGAGCACGCCGCCGCGCCGCGCCCCTACGACTGCGCGCGCTGCGGACTCAAATTTTTCTTCCGCGCCGAACTAGACAACCACGCTTTTGTGCACATCGAGGAGGCGGAAATAGCTCAGAGGGCGTTTTACGAAGCATACGCGAGGGGCGCCGCGTCGGCGTGGGCGGCCCTCGCCCCGCCGCCGCCGGACGCGGCGCCCACGCCCTCCGCCGCTGAGCCTCCGGTTAAAACGGAACCGGAAATAAAAGAAGAACGGAATGGCGAGGAATATATAGAAGCTTCACAACTTGAGGTTTTTATAATGATCGATGCGATCTGCCCATGA
- Protein Sequence
- MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRATRDPRDPRETRDHDRRRTTRCLHCGDAFRRPEMLQAHMATAHGVDAASLTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGDTIMPPAVEQPTPTDLSRRTGDDVTIAKRPKSSSESATPQTSLSPSTLLCNQCDAALPDFEAFRAHVKGHLEEGGELSRSSPAPCVHCGATFADVAATERHLTAHYLAVSCEYTCHSCVRSFPTPDDLQKHLFDLHAHHLYRCSLCKEVFDSKVAIQVHFAVAHSGESKVWVCRPCGAGGAGGAGGAGGTMRSEAEGAAHVRARHGGARCRCGALLAAPRRHYRCPAPACPDTFAVQYLLERHMQMHHAVMQQTLNGEMIRPKRLDNNNVEGEEACSPCAGGAAGAGVVGGTGGAGGALGDGAGVADERRRKNGAVALQCAYCGERTRSRAELEAHTRAHAGAARHKCLICDEVLPSAGVLAEHKLSHCKVIAGDTCSRCRARLPSEEAFLGHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPNDDEQRCAICLRPLTMGEAGEGVRACSSCYARHATPRAAPAAPPADHDCRLCRRSLGSPARLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHAAAPRPYDCARCGLKFFFRAELDNHAFVHIEEAEIAQRAFYEAYARGAASAWAALAPPPPDAAPTPSAAEPPVKTEPEIKEERNGEEYIEASQLEVFIMIDAICP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141854;
- 90% Identity
- iTF_01142561;
- 80% Identity
- -