Olig003041.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Osmia lignaria
Gene Symbol
Znf131
Assembly
GCA_012274295.1
Location
NW:181552-185004[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 8.7 6.1e+02 0.4 0.4 1 7 107 113 107 115 0.90
2 16 3.2 2.2e+02 1.8 0.9 1 10 314 323 314 336 0.76
3 16 0.0042 0.29 10.8 1.3 1 23 344 367 344 367 0.92
4 16 0.098 6.8 6.5 4.1 1 22 373 394 373 397 0.89
5 16 0.053 3.7 7.4 5.3 1 23 479 501 479 501 0.93
6 16 0.0028 0.19 11.4 0.5 1 23 508 531 508 531 0.92
7 16 0.00058 0.041 13.6 3.1 1 23 537 559 537 559 0.97
8 16 5.3e-05 0.0037 16.8 2.3 1 23 565 587 565 587 0.99
9 16 2.9e-06 0.0002 20.8 2.2 1 23 593 615 593 615 0.98
10 16 0.00092 0.064 12.9 0.3 1 23 628 651 628 651 0.95
11 16 8.8e-05 0.0062 16.1 4.2 1 23 667 690 667 690 0.96
12 16 0.00018 0.013 15.1 0.8 1 23 698 721 698 721 0.98
13 16 0.00038 0.027 14.1 0.7 1 23 727 749 727 749 0.97
14 16 0.0003 0.021 14.5 5.2 1 23 755 777 755 777 0.98
15 16 2.5e-06 0.00017 21.0 1.5 1 23 783 806 783 806 0.98
16 16 0.0035 0.25 11.1 1.6 2 23 811 832 811 832 0.97

Sequence Information

Coding Sequence
ATGGATACATTAAAGAGTATATTAATATGTCGTTTATGTGGGGTTAATATTATAGaaggaaaatgtaaaaacaTCTTTGAAGAATCAGCTGATTTggtacaaaaaataaaagaaacattaccAATTTCAATATCTATAGATGATAATGGTTCAAAACATCTCTGCTTGCCATGTTACAACAAAATTATCCtccattataaatttatccaAGAAGTAGTGGAACATTctaagaaacttgaaaatacatcacaaataaaatcttttcttgATTTATCCAAAGAAATAACAGACTTCTCAAAAATTCATAGCGATGCTGTATATACATGCCCAAACTGCAATGTAggtttaatgattttattagttaGTAATGCACAAGGCTGTGATTATACTTTTCAAATCTCATTAGCTATGGTAAATCATTCTGAAAAAAAGCATGTTAtacaagaaaagaatattgaGATACATAAAAACTTAATACATTTCAGTAATGCTAAGAGCAATATGTATTTGAAACATGAAAACCAAACAGCTTCTGAAGATGTTGAAAATGTTCCTAATTTAATAAGTCTTACATTACCTGTATTACAGccagaagaaaatataagtTATATTAATGTGTTAtctaataaagaaaatgcagAAACTGAAGAAtggaagaaacagaaaagaaaattcaaggaaTCTAATTGTTACAACCATTCTACTCGCCCGTCAAAGATATCGTGTACATCTAATGAGAATTTACTGAACTGTGATTATGATTCTACAGATCAGTTAGTAAAAACTGAGCATGAAAGTGATAATGCTTATTGGTTAGATAGCGAGACTGATTGTAAAAGTGGAAAAGATGAATATATGACTGAATTGCAAGATAttgtattagaaaaagatGATGCACAAGAAGAAGACTTAGATGATACATATAAATcttgtttaaaatatgaatgCAAATTATGTGGTGCACGTTATCTTTcacatttaaaatatgaatttcatatGGAGAGACATAAAACAggtaaaatatgtaaatacgaATGTACAGTATGCGATAAAGAAACAACTAGTGAAAATTTGTTATGGGATCACTATTTTCACACTCATAAAAGTTCACAACGTTATATTTGCTTAGAATGTGGCAAATTATTTACTAAACGGTCTAGATTGAATTGTcatcaaaaaaattataaacattgtGGTATGAAACAAATACAAGTTGATACGAATAAAGACATCGCTAATGAAGATTTTGTACAAAAGGTAATAGAAACGGCCAACCAAGAAAAAGTTTCTGTAAACTGTAATCTCTgtggtaaattaatttcaaaccTAGATCCCGATGCTATTAATGATTTAGTTACATGCGTTGATTGTGAAGATTCTACACTTTCTTTAATGGTAGATGGAAATGAGACTAAAGTAATCTCTCCGCGACAATATCACTGTTCTAAATGTCCTAAACACTTTGTACGAAAAGAACGATTAGAATTCCATGAAATGAGacataatgaaaatatgaatgaatTTGTTTGTAGTACTTGTGGAAAGGATTTTAGAGCAGAAAATTCTTTGTATGAACACTATCTCTTTGTTCATAAAGGAGCAAGACCTCATATCTGTGAATTGTGTGGTAAATCATTCCAATTAAAGGCCAGATTAAAAGAACACCACAGAATTCATACAGGTGAAAGACCATATCAGTGTGATATCTGTGGTCAACGATGCAGAACTACAAACGCCTTAAAACTTCATAGAAAAATTCACTTTTCCCATAATAGATATACTTGCAATGTCTGCAACAAATCGTTtagtaaaaaacaaaatatgaatGAACATTTAGAAAAGCattggaaaaatgataaaagtgtAACATTACCACAACTGTTTACGTGTCCGATTTGTTTAGAAGATTTTCCGACGTATCGAATGTTGAAATACCATATGACAGAAAtccatgaaataaataatcagGATCCAATTCTAACTAAACAGAAACCATGGTATGAATGTAGTGAATGTCATGAGAAGTTTAAGCATCAGATGTCCTTGAAAGCGCATAAAGAGAGAATACACGAAGGAAGAGTAGATCCAAATTATCAGTGTGACACTTGTAACGCTACTTATAGAGTAAAACAACTTCTAGTAAATCATATTAAAAGTAAACATAATGGTGAAAGACGTTATAAGTGTGCACAGTGTGAAAAAGGGTTTAATGACACAAAATCTTTATATAACCATGTATTATTACATACTGGTAAAAAACCATTTGTTTGTGAATATTGTAACATGAGTTTTAGGAGAAAAGATTCTAGAGATCATCATCGTAGGAAACATACAGGTGAACAACCTTATCAATGCCCTGACTGTGGTGAATCATTTTCTACCTATAATAATAGATCGAAACACCGAAAACGAGAACACGGGAAAGATCCTGAATGTCCTGAGTGTAGAGAAAAATGTAGTAATCAACAAGAAATtagaattcatttaaataaacatcttggagaaaaattgaaaaaattaaagaattcaaAAGCTGAAAAGACATAG
Protein Sequence
MDTLKSILICRLCGVNIIEGKCKNIFEESADLVQKIKETLPISISIDDNGSKHLCLPCYNKIILHYKFIQEVVEHSKKLENTSQIKSFLDLSKEITDFSKIHSDAVYTCPNCNVGLMILLVSNAQGCDYTFQISLAMVNHSEKKHVIQEKNIEIHKNLIHFSNAKSNMYLKHENQTASEDVENVPNLISLTLPVLQPEENISYINVLSNKENAETEEWKKQKRKFKESNCYNHSTRPSKISCTSNENLLNCDYDSTDQLVKTEHESDNAYWLDSETDCKSGKDEYMTELQDIVLEKDDAQEEDLDDTYKSCLKYECKLCGARYLSHLKYEFHMERHKTGKICKYECTVCDKETTSENLLWDHYFHTHKSSQRYICLECGKLFTKRSRLNCHQKNYKHCGMKQIQVDTNKDIANEDFVQKVIETANQEKVSVNCNLCGKLISNLDPDAINDLVTCVDCEDSTLSLMVDGNETKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMNEFVCSTCGKDFRAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGERPYQCDICGQRCRTTNALKLHRKIHFSHNRYTCNVCNKSFSKKQNMNEHLEKHWKNDKSVTLPQLFTCPICLEDFPTYRMLKYHMTEIHEINNQDPILTKQKPWYECSECHEKFKHQMSLKAHKERIHEGRVDPNYQCDTCNATYRVKQLLVNHIKSKHNGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPFVCEYCNMSFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNNRSKHRKREHGKDPECPECREKCSNQQEIRIHLNKHLGEKLKKLKNSKAEKT