Bwal005244.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus waltoni
Gene Symbol
-
Assembly
GCA_014737395.1
Location
JACXII010000015.1:463563-466322[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 5.1 4e+02 1.7 0.8 1 10 320 329 320 342 0.76
2 15 0.0081 0.64 10.5 1.4 1 23 350 373 350 373 0.92
3 15 0.0015 0.12 12.7 1.3 1 22 379 400 379 403 0.91
4 15 0.078 6.1 7.4 5.3 1 23 485 507 485 507 0.93
5 15 0.0071 0.56 10.7 0.5 1 23 514 537 514 537 0.91
6 15 0.00085 0.067 13.5 3.1 1 23 543 565 543 565 0.97
7 15 7.7e-05 0.006 16.8 2.3 1 23 571 593 571 593 0.99
8 15 4.3e-06 0.00034 20.8 2.2 1 23 599 621 599 621 0.98
9 15 0.0016 0.13 12.7 0.1 1 23 634 657 634 657 0.93
10 15 0.0003 0.023 15.0 3.5 1 23 673 696 673 696 0.96
11 15 8.7e-05 0.0069 16.7 0.5 1 23 704 727 704 727 0.98
12 15 0.00056 0.044 14.1 0.7 1 23 733 755 733 755 0.97
13 15 0.00043 0.034 14.5 5.2 1 23 761 783 761 783 0.98
14 15 3.6e-06 0.00028 21.0 1.5 1 23 789 812 789 812 0.98
15 15 0.0003 0.024 15.0 0.9 2 23 818 839 818 839 0.97

Sequence Information

Coding Sequence
ATGGATACTTCAAAGGATACATTAATATGTCGTTTATGTGGAATAAATCTTGTAGAAGGAAAGCATAAAAGTATCTTTGAAGGATCAACAGATTTAATACACAAAATAAAGGAAACATTGCCAATTTCAATATCTATTGATGATAATGGTTCAAAATATGTATGTTTGTCATGTTATGACAAAATCACTTTTTACTACAAATTTATTCAAGAGGTACTTGAATATTCTAAAAGATTAGACAATGCATCACAAATAAAATCCTTTTTTGATCTATCTAAAGAAATAACAGACTTTTCACAAATTCATAGTGATGCTGTATATACATGTCCAAATTGTAATGTAGATTTAATGATTTTATTAGTTAATAATCCTCAAGGCTGTGATTATACCTTCCAAATCTCATTAGCTATGGTAAATCATTCTGAAGAAAAACATATTATAAAGGAAAAGAATATACAAATACATAAAAATGTAGTACATATTAATAATATTAAAAATAATGTACATTTAAAACATGAAAACAAAACAACAATTGCTGAAGATATTGGAAATATGCCTAATCAAGAAGTAAGCCTAACATTACCAGTATTACTCTCAACAAACTATTACAAAGAGGAAGATTTAAATTGTATCGATGCATTATCTAGTAAACAAAACACAAAAATTGAAGTAGAAATAGACACAAGAAAAGATCTTAAGGAATCTAATTCTATTCATCTCTCAAAAGTATCAAAACTACAAGAAATATCACATGTATCTAATAATTTAATGGATTATGATTATGATTCTACAGATCCATTAATGAAAAATGAACCTGAGAGTGATAATACTTATTGGCTAGACAGTGAGACTGATTGTAAAAGTGAGAAAGATACATATATGACAACATCACAAGATATTATGCTTGAACAAAATGATGTACAAGATGAAAGTGATATATATAAATCTTGTTTAAAATATGTATGTAAATTATGTGGTGCTCGCTATCTTTCACACTTAAAATATGAATTTCACATGGAAAGACACAAACTATGTAAAATAGATAAGTATGAATGTACATTATGTGATAAAGAAACAAGTAATGAAAATTTATTATGGGATCATTATTTTCACACACACAAAAGTTTACAACGTTATATTTGTGTAGAATGTGGAAAATTATTTACAAAACGATCTAGATTGAATGGACATCAAAAAAATTATAAACATTCTGGTGTAAAACAAATACAAGTTGGTACTAGTGAAGATGCTATTAGTGAAGATGTCATACAAAAAGCTATAGCAACAACAAAACAGGAGAAAGTATCTATAAATTGTAATCTTTGTGGTAAACTAATTTCAGACTTAGATCCAGATGCTATTAACGACTTAGTTACATGTGCTACTTGTGAAGATTCTACACTTTCTTTAATGATAGATGGAAACGAAACAAAAGTAATTTCTCCACGTCAGTATCATTGTTCTAAATGTCCCAAACACTTTGTAAGAAAAGAAAGACTAGAATTTCATGAAATGAGGCATAATGAAAATATGAATGAATTCATTTGTAGTACTTGTGGAAAAGATTTTAGAGCAGAAAATTCTTTATATGAACATTACCTCTTTGTTCATAAAGGAGCAAGACCTCACATTTGTGAACTATGTGGTAAGTCATTTCAGCTGAAAGCTAGATTAAAAGAACATCATAGAATTCATACAGGTGAGAGACCATATCAATGTGATATCTGTGGTCAACGATGTAGAACTACAAATGCTTTAAAGCTTCATAGAAAAATTCATTTTTCTCATAACAGATATACTTGTAATGTATGTAATAAGTCATTTAGTAAAAAGCAGAATATGAATGAACATTTAGAGAAGCATTGGAAAAATGATAAAAGTGTAACATTACCACAATTATTTACATGTCCAATTTGTGTAGAAGATTTTCCAACCTACCGTATGTTAAAATATCATATGGTAGAAATTCATGAAATAAATAATCAAGATCCAATTTTGACAAAACAAAAACCATGGTATGAATGTGTAGAATGTCACGAAAAATTTAAACATCAAATGTCTTTAAAAGCACATAAAGAGAGAGTACATGAAGGAAGAGTAGATCCTATTTATCAGTGTGACATATGTAATGCAACATATAGAGTAAAACAGCTTTTAGTAAATCATATTAAAAGTAAACATAATGGTGAAAGACGTTATAAATGTGCTCAATGTGAAAAAGGATTTAATGACACTAAATCTTTATATAATCATGTATTATTACATACCGGTAAAAAGCCATTTGTCTGTGAATATTGTAATATGAGTTTTAGAAGAAAAGACTCCAGAGATCATCATCGTAGAAAACATACTGGTGAGCAACCTTATCAATGTCCAGATTGTGGTGAATCATTTTCTACCTACAATAATCGATCTAAACATCGAAAGAGAGAACATGGAGAAGGAGATCCAGAGTGTCCAGAATGTGGAGAAAAATGTAGTAATCAACAAGAAATTAGAATACATTTAAATAAACATCTGGGGGAGAAATTAAAAAAATTACAAAATATAAAATCTGAATAG
Protein Sequence
MDTSKDTLICRLCGINLVEGKHKSIFEGSTDLIHKIKETLPISISIDDNGSKYVCLSCYDKITFYYKFIQEVLEYSKRLDNASQIKSFFDLSKEITDFSQIHSDAVYTCPNCNVDLMILLVNNPQGCDYTFQISLAMVNHSEEKHIIKEKNIQIHKNVVHINNIKNNVHLKHENKTTIAEDIGNMPNQEVSLTLPVLLSTNYYKEEDLNCIDALSSKQNTKIEVEIDTRKDLKESNSIHLSKVSKLQEISHVSNNLMDYDYDSTDPLMKNEPESDNTYWLDSETDCKSEKDTYMTTSQDIMLEQNDVQDESDIYKSCLKYVCKLCGARYLSHLKYEFHMERHKLCKIDKYECTLCDKETSNENLLWDHYFHTHKSLQRYICVECGKLFTKRSRLNGHQKNYKHSGVKQIQVGTSEDAISEDVIQKAIATTKQEKVSINCNLCGKLISDLDPDAINDLVTCATCEDSTLSLMIDGNETKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMNEFICSTCGKDFRAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGERPYQCDICGQRCRTTNALKLHRKIHFSHNRYTCNVCNKSFSKKQNMNEHLEKHWKNDKSVTLPQLFTCPICVEDFPTYRMLKYHMVEIHEINNQDPILTKQKPWYECVECHEKFKHQMSLKAHKERVHEGRVDPIYQCDICNATYRVKQLLVNHIKSKHNGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPFVCEYCNMSFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNNRSKHRKREHGEGDPECPECGEKCSNQQEIRIHLNKHLGEKLKKLQNIKSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01123228;
90% Identity
iTF_00219968;
80% Identity
-