Basic Information

Insect: Bombus dahlbomii
Gene Symbol: -
Assembly: GCA_037178635.1
Location: CM074116.1:1694488-1697244[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6 5.6e+02 1.7 0.8 1 10 319 328 319 341 0.76

2 15 0.0095 0.88 10.5 1.4 1 23 349 372 349 372 0.92

3 15 0.0073 0.68 10.8 1.3 1 22 378 399 378 402 0.91

4 15 0.091 8.5 7.4 5.3 1 23 484 506 484 506 0.93

5 15 0.0083 0.77 10.7 0.5 1 23 513 536 513 536 0.91

6 15 0.001 0.093 13.5 3.1 1 23 542 564 542 564 0.97

7 15 9e-05 0.0084 16.8 2.3 1 23 570 592 570 592 0.99

8 15 5e-06 0.00046 20.8 2.2 1 23 598 620 598 620 0.98

9 15 0.0017 0.16 12.8 0.2 1 23 633 656 633 656 0.93

10 15 0.00025 0.023 15.5 3.3 1 23 672 695 672 695 0.96

11 15 0.0001 0.0095 16.7 0.5 1 23 703 726 703 726 0.98

12 15 0.00066 0.061 14.1 0.7 1 23 732 754 732 754 0.97

13 15 0.00051 0.047 14.5 5.2 1 23 760 782 760 782 0.98

14 15 4.6e-06 0.00042 20.9 1.6 1 23 788 811 788 811 0.98

15 15 0.0023 0.21 12.4 2.7 2 23 817 838 817 838 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6	5.6e+02	1.7	0.8	1	10	319	328	319	341	0.76
2	15	0.0095	0.88	10.5	1.4	1	23	349	372	349	372	0.92
3	15	0.0073	0.68	10.8	1.3	1	22	378	399	378	402	0.91
4	15	0.091	8.5	7.4	5.3	1	23	484	506	484	506	0.93
5	15	0.0083	0.77	10.7	0.5	1	23	513	536	513	536	0.91
6	15	0.001	0.093	13.5	3.1	1	23	542	564	542	564	0.97
7	15	9e-05	0.0084	16.8	2.3	1	23	570	592	570	592	0.99
8	15	5e-06	0.00046	20.8	2.2	1	23	598	620	598	620	0.98
9	15	0.0017	0.16	12.8	0.2	1	23	633	656	633	656	0.93
10	15	0.00025	0.023	15.5	3.3	1	23	672	695	672	695	0.96
11	15	0.0001	0.0095	16.7	0.5	1	23	703	726	703	726	0.98
12	15	0.00066	0.061	14.1	0.7	1	23	732	754	732	754	0.97
13	15	0.00051	0.047	14.5	5.2	1	23	760	782	760	782	0.98
14	15	4.6e-06	0.00042	20.9	1.6	1	23	788	811	788	811	0.98
15	15	0.0023	0.21	12.4	2.7	2	23	817	838	817	838	0.97

Sequence Information

Coding Sequence: ATGGATACTTCAAAGAATACATTAATATGTCGTTTATGTGGTGTAAATCTTGTAGAAGGAAAGCATAAAAGTATCTTTGAAGGATCAACAgatttaatacataaaataaaggaaacatTGCCAATTTCAATATCTATTGATGATAATGgttcaaaatatgtatgtttGTCATGTTATgacaaaattactttttactaCAAATTTATTCAAGAAGTACTGGAATATTCTAAAAGATTAGAAAATGCATCACAAATAGAATCCTTCTTTGATCTATCTAAAGAAGTAACAGACATTTCACAAATTCATAGTGATGCTGTATACACATGTCCAAATTGTAATGTggatttaatgattttattagttAATAATCCTCAAGGCTGTGATTATACCTTCCAAATCTCATTAGCTATGGTAAATCATTCTgaaaaaaaacatataaagaaaaagaatatacaaatacataaaaatgtagtacatattaataatattaaaaataatgtacattTAAAACATGGAAACAAAACAACAATTACtgaagatattgaaaatatgcCTAATCAAGAAGTAAGCCTAACATTACCTGTATTAATCTTAACAAACTACTACAAagaggaaaatttaaattatattgattCATTATCTAGCAAacaaaacacaaaaattgaAGTAGAAAAAGACATAAGAAAAGATCTTAAGGAATCTAATACTGTTTATCtctcaaaaatatcaaaactaCAAGAAATATCACATGTgtctaataatttaatagattatgattATGATTCTGCAGATCCATTAGTAAAAAATGAACCTGAGAGTGATAATACTTATTGGCTAGACAGTGAGACTGATTATAAAAGTGAGAAAGATACATGTATAACAACATCACAAGACACCATGCTTGAACGAAATGATATACAGgatgaaaatgatatatataaatcttgtttaaaatatgtatgtaaattatgTGGTGCTCGCTATCTTTCACACTTAAAATATGAGTTTCACATGGAAAGACATAAGCTAggtaaaatagataaatatgaATGTACATTATGTGATAAAGAAACAAGTAATGAAAACTTATTATGGGATCATTATTTTCACACACACAAGagtttacaacgttatatttgtgTAGAGtgtggaaaattatttacaaaacgaACTAGATTGAATGGGCatcaaaaaaattataaacattctGGTGTAAAACAAATACAAGTTGATACTAGTGAAGATGCTATTAGTGAAGATATCATACAAAAAGCTATAGCAACAACAAAACAGGAGAAAGTATCTATAAATTGTAATCTTTGTGGTAAACTAATTACAGGCGTAGATCCAGATGCTGTTAATGATTTAGTTACATGTGCTACTTGTGAAGATTCTACACTTTCTTTAATGATAGATGGAAATGAGACAAAAGTAATTTCTCCACGTCAATATCATTGTTCTAAGTGTCCCAAACACTTTGTACGAAAAGAAAGACTAGAATTTCATGAAATGAGGcataatgaaaatatgaatgaaTTCATTTGTAGTACTTGTGGAAAAGATTTTAGAGcagaaaattctttatatGAACATTACCTCTTTGTTCATAAAGGAGCAAGACCTCACATTTGTGAACTATGTGGTAAGTCATTTCAGTTAAAAGCTAGATTAAAAGAACATCATCGAATTCATACAGGTGAGAGACCATATCAATGTGATATCTGTGGTCAACGATGTAGAACTACAAACGCTTTAAAGCttcatagaaaaattcatttttctcatAACAGATATACTTGTAATGTATGTAATAAGTCATTTAGTAAAAAGCAAAATATGAATGAACATTTAGAAAAACAttggaaaaatgataaaagtgTAACACTACCACAATTATTTACATGTCCAATTTGTGTAGAAGATTTTCCAACCTACCGTATGTTAAAATATCATATGGTACAaattcatgaaataaataatcaggatccaattttgataaaacaaaaaccaTGGTATGAATGTGCAGAATGTCACGAGAAATTTAAACATCAAATGTCTTTAAAAGCACATAAAGAGAGAGTACATGAAGGAAAAGTAAATCCTATTTATCAGTGTGACATATGTAATGCAACATATAGAGTAAAGCAACTTTTAGTAAATCATATTAAAAGTAAACATGATGGTGAAAGACGTTATAAATGTGCTCAATGTGAAAAAGGATTTAATGACACTAAATCTTTATATAATCATGTATTACTACATACTGGAAAAAAACCATTTGTCTGtgaatattgtaatatgaGTTTTAGAAGAAAAGACTCCAGAGATCATCACCGTAGAAAACATACTGGTGAACAACCTTATCAATGTCCAGATTGCGGTGAATCATTTTCTACCTATAATAATCGATCTAAAcatcgaaagaaagaacacGGGGAAGGAGATCCAGAGTGTCCAGAATGTGGAGAAAAATGTTGTAATCAGCAAGAAATTagaatacatttaaataaacatctgggagagaaattaaaaaaattacaaaatataaaatctgaGTAG
Protein Sequence: MDTSKNTLICRLCGVNLVEGKHKSIFEGSTDLIHKIKETLPISISIDDNGSKYVCLSCYDKITFYYKFIQEVLEYSKRLENASQIESFFDLSKEVTDISQIHSDAVYTCPNCNVDLMILLVNNPQGCDYTFQISLAMVNHSEKKHIKKKNIQIHKNVVHINNIKNNVHLKHGNKTTITEDIENMPNQEVSLTLPVLILTNYYKEENLNYIDSLSSKQNTKIEVEKDIRKDLKESNTVYLSKISKLQEISHVSNNLIDYDYDSADPLVKNEPESDNTYWLDSETDYKSEKDTCITTSQDTMLERNDIQDENDIYKSCLKYVCKLCGARYLSHLKYEFHMERHKLGKIDKYECTLCDKETSNENLLWDHYFHTHKSLQRYICVECGKLFTKRTRLNGHQKNYKHSGVKQIQVDTSEDAISEDIIQKAIATTKQEKVSINCNLCGKLITGVDPDAVNDLVTCATCEDSTLSLMIDGNETKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMNEFICSTCGKDFRAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGERPYQCDICGQRCRTTNALKLHRKIHFSHNRYTCNVCNKSFSKKQNMNEHLEKHWKNDKSVTLPQLFTCPICVEDFPTYRMLKYHMVQIHEINNQDPILIKQKPWYECAECHEKFKHQMSLKAHKERVHEGKVNPIYQCDICNATYRVKQLLVNHIKSKHDGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPFVCEYCNMSFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNNRSKHRKKEHGEGDPECPECGEKCCNQQEIRIHLNKHLGEKLKKLQNIKSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01123228;
90% Identity: iTF_00219968;
80% Identity: -