Bhae013908.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus haemorrhoidalis
Gene Symbol
-
Assembly
GCA_014825975.1
Location
CM026177.1:1557685-1561020[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 5.2 4.7e+02 1.7 0.8 1 10 321 330 321 343 0.76
2 15 0.0083 0.75 10.5 1.4 1 23 351 374 351 374 0.92
3 15 0.0064 0.57 10.8 1.3 1 22 380 401 380 404 0.91
4 15 0.079 7.2 7.4 5.3 1 23 486 508 486 508 0.93
5 15 0.0072 0.65 10.7 0.5 1 23 515 538 515 538 0.91
6 15 0.00087 0.079 13.5 3.1 1 23 544 566 544 566 0.97
7 15 7.8e-05 0.0071 16.8 2.3 1 23 572 594 572 594 0.99
8 15 4.3e-06 0.00039 20.8 2.2 1 23 600 622 600 622 0.98
9 15 0.0016 0.15 12.7 0.1 1 23 635 658 635 658 0.93
10 15 0.00021 0.019 15.5 3.3 1 23 674 697 674 697 0.96
11 15 8.9e-05 0.008 16.7 0.5 1 23 705 728 705 728 0.98
12 15 0.00057 0.052 14.1 0.7 1 23 734 756 734 756 0.97
13 15 0.00044 0.04 14.5 5.2 1 23 762 784 762 784 0.98
14 15 3.7e-06 0.00033 21.0 1.5 1 23 790 813 790 813 0.98
15 15 0.00031 0.028 15.0 0.9 2 23 819 840 819 840 0.97

Sequence Information

Coding Sequence
ATGGATACTTCAAAGGATACATTAATATGTCGTTTATGTGGTGTAAATCTTGTAGAAGGAAAGCATAAAAGTATCTTTGAAGGATCAACAGATTTAATACATAAAATAAAGGAAACATTGCCAATTTCAATATCTATTGACGATAATGGTTCAAAATATGTATGTTTGCCATGTTATGACAAAATTACTTTTTACTACAAATTTATTCAAGAAGTACTGGAATATTCTAAAAGATTAGAAAATGCATCACAAATAGAATCCTTCTTTGATCTATCTAAAGAAGTAACAGACTTTTCACAAATTCATAGTGATGCTATATATACATGTCCAAATTGTAATGTAGATTTAATGATTTTATTAGTTAATAATCCCCAAGGCTGTGATTATACCTTCCAAATCTCATTAGCTATGGTAAATCATTCTGAAAAAAAACATATAAAGAAAAAGAATATACAAATACATAAAAATGTAGTACATCTTAACAATACTAAAAATAATATATATTTAAAACATGGAAACAAAACAACAATTACTGAAGATATTGAAAATATGCCTAATCAAGAAGTAAGCCTAACATTACCTGCATTAATCTCAACAAACTACTACAAAGAGGAAAATTTAAATTGTATCGATACATTATCTAGCAACCAGAACACAAACACAAAATTTGAAGTAGAAAAAGACACAAGAAAAGATCTTAAGGAATCTAATTTTGTTCATCTCTCAAAAATATCAAAACTACATGAAATACCACATGTATCTAATAATTTAGTGGATTATTATTATGATTCTGCAGATCCATTAGTGAAAAATGAACCTGAGAGTGATAATACCTATTGGCTAGACAGTGAGACTGATTATAAAAGTGAGAAAGATACATGTATAAGAACGTCACAAGACACTATGCTTGAACAAAATGATATACAAGATGAAAATGATATATATAAATCTTGTTTAAAATATGTATGTAAATTATGTGGTGCTCGCTATCTTTCACACTTAAAATATGAATTTCACATGGAAAGACATAAGCTAGGTAAAATAGATAAATATGAATGTACATTATGTGATAAAGAAACAAGTAATGAAAACTTATTATGGGATCATTATTTTCACACACACAAAAGTTTACAACGTTATATTTGTGTAGAGTGTGGAAAATTATTTACAAAACGAACTAGATTGAATGGACATCAAAAAAATTATAAACATTCTGGTGTAAAACAAATACAAGTTGGTACTAGTGAAGATGCTATTAGTGAAGATGTCATACAAAAAGCTATAGCAACAACAAAACAGGAGAAAGTGTCTATAAATTGTAATCTTTGTGGTAAACTAATTTCAGACTTAGATCCAGATGCTATTAATGACTTAGTTACATGTGCTACCTGTGAAGATTCTACACTTTCTTTAATGATAGATGGAAATGAGACAAAAGTAATTTCTCCACGTCAATATCATTGTTCTAAGTGTCCCAAACACTTTGTACGAAAAGAAAGACTAGAATTTCATGAAATGAGGCATAATGAAAATATGAATGAATTCATTTGTAGTACTTGTGGGAAAGATTTTAGAGCAGAAAATTCTTTATATGAACATTACCTCTTTGTTCATAAAGGAGCGAGACCTCACATTTGTGAACTATGTGGTAAGTCATTTCAGTTAAAAGCTAGATTAAAAGAACATCATCGAATTCATACAGGTGAGAGACCATATCAATGTGATATCTGTGGTCAACGATGTAGAACTACAAACGCTTTAAAGCTTCATAGAAAAATTCATTTTTCTCATAACAGATATACTTGTAACGTGTGTAATAAGTCATTTAGTAAAAAGCAAAATATGAATGAACATTTAGAGAAGCATTGGAAAAATGATAAAAGTGTAACATTACCACAATTATTTACATGTCCAATTTGTGTAGAAGATTTTCCAACTTACCGTATGTTAAAATATCATATGGTAGAAATTCATGAAATAAATAATCAGGATCCAATATTGATAAAACAAAAACCATGGTATGAATGTGCAGAATGTCACGAGAAATTTAAACATCAAATGTCTTTAAAAGCACATAAAGAGAGAGTACATGAAGGAAGAGTAGATCCTATTTATCAGTGTGACATATGTAATGCAACATATAGAGTAAAACAGCTTTTAGTAAATCATATTAAAAGTAAACATGATGGTGAAAGACGTTATAAATGTGCTCAATGTGAAAAAGGATTTAATGACACTAAATCTTTATATAATCATGTATTATTGCATACTGGGAAAAAACCATTTGTCTGTGAATATTGTAATATGAGTTTTAGAAGAAAAGACTCCAGAGATCATCACCGTAGGAAACATACTGGTGAACAACCTTATCAATGTCCAGATTGTGGCGAATCATTTTCTACCTATAATAATCGATCTAAACATCGAAAGAGAGAACACGGAGAAGGAGATCCAGAGTGTCCAGAATGTGGAGAAAAATGTAGTAATCAGCAAGAAATTAGAATACATTTAAATAAACATCTGGGAGAGAAATTAAAAAGATTACAAAATATAAAATCTGAGTAG
Protein Sequence
MDTSKDTLICRLCGVNLVEGKHKSIFEGSTDLIHKIKETLPISISIDDNGSKYVCLPCYDKITFYYKFIQEVLEYSKRLENASQIESFFDLSKEVTDFSQIHSDAIYTCPNCNVDLMILLVNNPQGCDYTFQISLAMVNHSEKKHIKKKNIQIHKNVVHLNNTKNNIYLKHGNKTTITEDIENMPNQEVSLTLPALISTNYYKEENLNCIDTLSSNQNTNTKFEVEKDTRKDLKESNFVHLSKISKLHEIPHVSNNLVDYYYDSADPLVKNEPESDNTYWLDSETDYKSEKDTCIRTSQDTMLEQNDIQDENDIYKSCLKYVCKLCGARYLSHLKYEFHMERHKLGKIDKYECTLCDKETSNENLLWDHYFHTHKSLQRYICVECGKLFTKRTRLNGHQKNYKHSGVKQIQVGTSEDAISEDVIQKAIATTKQEKVSINCNLCGKLISDLDPDAINDLVTCATCEDSTLSLMIDGNETKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMNEFICSTCGKDFRAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGERPYQCDICGQRCRTTNALKLHRKIHFSHNRYTCNVCNKSFSKKQNMNEHLEKHWKNDKSVTLPQLFTCPICVEDFPTYRMLKYHMVEIHEINNQDPILIKQKPWYECAECHEKFKHQMSLKAHKERVHEGRVDPIYQCDICNATYRVKQLLVNHIKSKHDGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPFVCEYCNMSFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNNRSKHRKREHGEGDPECPECGEKCSNQQEIRIHLNKHLGEKLKRLQNIKSE