Bcos013441.1
Basic Information
- Insect
- Bombus consobrinus
- Gene Symbol
- -
- Assembly
- GCA_014737455.1
- Location
- JACXIU010000040.1:1817841-1820597[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.1 4.1e+02 1.7 0.8 1 10 319 328 319 341 0.76 2 15 0.008 0.64 10.5 1.4 1 23 349 372 349 372 0.92 3 15 0.38 31 5.2 2.6 1 22 378 399 378 402 0.87 4 15 0.077 6.2 7.4 5.3 1 23 484 506 484 506 0.93 5 15 0.007 0.56 10.7 0.5 1 23 513 536 513 536 0.91 6 15 0.00084 0.068 13.5 3.1 1 23 542 564 542 564 0.97 7 15 7.6e-05 0.0061 16.8 2.3 1 23 570 592 570 592 0.99 8 15 6.6e-06 0.00053 20.2 1.5 1 23 598 620 598 620 0.98 9 15 0.0014 0.12 12.8 0.2 1 23 633 656 633 656 0.93 10 15 0.00021 0.017 15.5 3.3 1 23 672 695 672 695 0.96 11 15 0.00026 0.021 15.1 0.8 1 23 703 726 703 726 0.98 12 15 0.00056 0.045 14.1 0.7 1 23 732 754 732 754 0.97 13 15 0.00043 0.034 14.5 5.2 1 23 760 782 760 782 0.98 14 15 1.4e-06 0.00011 22.3 1.7 1 23 788 811 788 811 0.98 15 15 0.0003 0.024 15.0 0.9 2 23 817 838 817 838 0.97
Sequence Information
- Coding Sequence
- ATGGATACTTCAAAGGGTACATTAATATGTCGTTTATGTGGTGTAAATCTTGTAGAAGGAAAGCATAAAAGTATCTTTGAAGGATCAACAGATTTAATACATAAAATAAAGGAAACATTGCCAATTTCAATATCTATCGATGATAATGGTTCAAAATATGTATGTTTGTCATGTTATGACAAAATTACTTTTTATTACAAATTTATTCAAGAAGTACTGGAATATTCTAAAAGATTAGAAAATGTATCACAAATAGAATCCTTCTTTGATCTATCTAAAGAAGTAACAGACTTTTCACAAATTCATAGTGATGCTATATATACATGTCCAAATTGTAATGTAGATTTAATGATTTTATTAGTTAATAATCCTCAAGGCTGTGATTATACCTTCCAAATCTCATTAGCTATGGTAAATCATTCTGAAAAAGAACATATAAAGAAAAAGAATATACAAATACATAAAAATGTAGTGCATCTTAATAATACTAAAAATAATGTACATTTAAAACATGGAAACAAAACAACAATTACTGAAGATATTGAAAATATGCCTAATCAAGAAGTAAGCCTAACATTACCTGTATTAATCTCAACAAACTACTACAAAGAAGAAAATTTAAATTGTATTGATGCATTATCTAGCAAAGAAAACACAAAAATTGAAGTAGAAAAAGACACAAGAAAAGATCTTAAGGAATCTAATTCTGTTCATCTCTCAAAAATATCAAAACTACAAGAAATGTCACATGTGTCTAATAATTTAATGGATTATGATTATGATTCTGCAGATCCATTAGTGAAAAATGAACCTGAGAGTGATAATACTTATTGGCTAGACAGTGAGACTGATTATAAAAGTGAGAAAGATACATGTATAACAACATCACAAGACACTATGCTTGAACAAAATGATATACAAGATGAAAATGATATATATAAATCTTGTTTAAAATATGTATGTAAATTGTGCGGTGCTCGCTATCTTTCACACTTAAAATATGAATTTCACATGGAAAGACACAAACTAGGCAAAATGGATAAATATGAATGTACATTATGTGATAAAGAAACAAGTAATGAAAACTTATTATGGGATCATTATTTTCACACACACAAGAGTTTACAACGTTATATTTGTATAGAGTGTGGAAAATTATTTACAAAACGAACTAGATTGAATGGACATCAAAAACATTATAAACATTCTGGTGTTAAACAAATACAAGTTGGTACTAGTGAAGATGCTATTAGTGAAGATGTCATACAAAAAGCTATAGCAACAACAAAACAGGAGAAAGTATCTATAAATTGTAATCTTTGTGGTAAACTAATTTCAGACTTAGATCCAGATGCTATTAATGACTTAGTTACATGTGCTACTTGTGAAGATTCTACACTTTCTTTAATGATAGATGGAAATGAGACAAAAGTAATTTCTCCACGTCAATATCATTGTTCTAAGTGTCCCAAACACTTTGTACGGAAGGAAAGACTAGAATTTCATGAAATGAGGCATAATGAAAATATGAATGAATTCATTTGTAGTACTTGTGGAAAAGATTTTAGAGCAGAAAATTCTTTATATGAACATTACCTCTTTGTTCATAAAGGAGCAAGACCTCACATTTGCGAACTATGTGGTAAGTCATTTCAGTTAAAAGCTAGATTAAAAGAACATCATCGAATTCATACAGGTGAGAGACCATATCAATGTGATATCTGCGGTCAACGATGTAGAACTACAAACGCTTTAAAGCTTCATAGAAAAATTCATTTTTCTCATAACAGATATATTTGTAACGTATGTAATAAGTCATTTAGTAAAAAGCAAAATATGAATGAACATTTAGAGAAGCATTGGAAAAATGATAAAAGTGTAACATTACCACAATTATTTACATGTCCAATTTGTGTAGAAGATTTTCCAACCTACCGTATGTTAAAATATCATATGGTACAAATTCATGAAATAAATAATCAGGATCCAATTTTGATAAAACAAAAACCATGGTATGAATGTGCAGAATGTCACGAGAAATTTAAACATCAAATGTCTTTAAAAGCACATAAAGAGAGAGTACATGAAGGAAGGGTAGACCCTATTTATCAATGTGATACATGTAATGCAACATATAGAGTAAAACAACTTTTAGTAAATCATATTAAAAGTAAACATGATGGTGAAAGACGTTATAAATGTGCTCAATGTGAAAAAGGATTTAATGACACTAAATCTTTATATAATCATGTATTATTACATACTGGGAAAAAACCATTTGTCTGTGAATATTGTAATATGAGTTTTAGAAGAAAAGACTCCAGGGATCATCACCGTAGAAAACATACTGGTGAACAACCTTATCAATGTCCAGATTGTGGTGAATCATTTTCTACCTATAATAATCGAACTAAACATCGAAAGAGAGAACATGGAGAAGGAGATCCAGAGTGTCCAGAATGTGGAGAAAAATGTAGTAATCAGCAAGAAATTAGAATACATTTAAATAAACATCTGGGAGAGAAATTAAAAAAATTACAAAATATAAAATCTGAGTAG
- Protein Sequence
- MDTSKGTLICRLCGVNLVEGKHKSIFEGSTDLIHKIKETLPISISIDDNGSKYVCLSCYDKITFYYKFIQEVLEYSKRLENVSQIESFFDLSKEVTDFSQIHSDAIYTCPNCNVDLMILLVNNPQGCDYTFQISLAMVNHSEKEHIKKKNIQIHKNVVHLNNTKNNVHLKHGNKTTITEDIENMPNQEVSLTLPVLISTNYYKEENLNCIDALSSKENTKIEVEKDTRKDLKESNSVHLSKISKLQEMSHVSNNLMDYDYDSADPLVKNEPESDNTYWLDSETDYKSEKDTCITTSQDTMLEQNDIQDENDIYKSCLKYVCKLCGARYLSHLKYEFHMERHKLGKMDKYECTLCDKETSNENLLWDHYFHTHKSLQRYICIECGKLFTKRTRLNGHQKHYKHSGVKQIQVGTSEDAISEDVIQKAIATTKQEKVSINCNLCGKLISDLDPDAINDLVTCATCEDSTLSLMIDGNETKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMNEFICSTCGKDFRAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGERPYQCDICGQRCRTTNALKLHRKIHFSHNRYICNVCNKSFSKKQNMNEHLEKHWKNDKSVTLPQLFTCPICVEDFPTYRMLKYHMVQIHEINNQDPILIKQKPWYECAECHEKFKHQMSLKAHKERVHEGRVDPIYQCDTCNATYRVKQLLVNHIKSKHDGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPFVCEYCNMSFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNNRTKHRKREHGEGDPECPECGEKCSNQQEIRIHLNKHLGEKLKKLQNIKSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01123228;
- 90% Identity
- iTF_00219968;
- 80% Identity
- -