Xvio007045.1
Basic Information
- Insect
- Xylocopa violacea
- Gene Symbol
- -
- Assembly
- GCA_963969225.1
- Location
- CAXAJV010000011.1:24682123-24685177[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5 4.1e+02 1.9 0.5 1 10 291 300 291 313 0.80 2 15 0.0056 0.46 11.2 1.1 1 23 321 344 321 344 0.92 3 15 0.00017 0.014 16.0 0.9 1 22 350 371 350 374 0.91 4 15 0.1 8.4 7.2 4.8 1 23 456 478 456 478 0.93 5 15 0.0082 0.67 10.7 0.5 1 23 485 508 485 508 0.91 6 15 0.00099 0.081 13.6 3.1 1 23 514 536 514 536 0.97 7 15 8.9e-05 0.0073 16.9 2.3 1 23 542 564 542 564 0.99 8 15 5e-06 0.0004 20.8 2.2 1 23 570 592 570 592 0.98 9 15 0.0013 0.11 13.2 0.1 1 23 605 628 605 628 0.94 10 15 0.00035 0.028 15.0 3.5 1 23 644 667 644 667 0.96 11 15 0.00032 0.026 15.2 0.6 1 23 675 698 675 698 0.98 12 15 0.00065 0.053 14.2 0.7 1 23 704 726 704 726 0.97 13 15 0.0005 0.041 14.5 5.2 1 23 732 754 732 754 0.98 14 15 4.2e-06 0.00034 21.1 1.5 1 23 760 783 760 783 0.98 15 15 0.001 0.082 13.6 1.2 2 23 789 810 789 810 0.97
Sequence Information
- Coding Sequence
- ATGGATGCATTGAAGGATATATTGATATGTCGTTTATGTGGTGTAAATATTGCAGAAGGAAAATACAAAAGTATTTTCAAGGGATCGACAGATTTAATAAACAAAATAAAAGAAACATTACCAATATCTATATCGATTGATGATAATGGTTCAAAATATATATGCTTATCATGTTACAATAAAATAACTTTATACTACAAATTTGTTCAAGAAGTAGTAGAATATTCAAAAAGATTTGAAAATACATCACAAATGAAATCCTTATTTAATTTATCTGAAGAAGTATCAAGTTTCTCACAAATACATAACGATGCTGTATATACATGTCCAAACTGTAATATAGATTTAATGATCTTATTAATCAGTAACCCACAAGGCTGTGATTATACCTTCCAAATCTCATTAGCTATGGTAAATCATTCTACAAAGAAGCATATCACAAAGGAGAAGAACATGCAGATACATAAAAATATAGTACCCTTCAATAATGCTAAAAGTAATGCACATTTAGGACATGGACATAAAACAACTACAGGAAGCATTGAAATTATGCCTAATGTAGCAAGTCCCATGTTACCTGTATTGAAACAagaggaaaatttaaattgcacTGAGGCATTATCTGGTGAACAAAACTTGGAGATTGAGACGCAGGAGAAATTGAGAAAGCAGCTTAAAAAATCAAAATCTTGTGAAGCCTCCATTTGTTCAAGAGATCTATTAAAGAAAGAACATGAGAATGACAAAACTTATTGGTTAGACAGTGAAATTGATTGTAAAATTGAAAAGGATTCAATCGAATTGCGAAATGCTACACTCAAAAAACATGATGTACAAGATGAAAATGATACATATAAGTTTTGCTTGAAATATGAATGTAAATTATGTGGAGCACGGTATCTTTCATACTTGAAATATGAATTTCACATGGAAAGGCACAAAGCTGGTAAAATACATAAATATGAGTGTACAGTATGTGACAAAGAAACAAGTAGTGAAAATTTATTATGGGATCATTACTACCATACACATAAAAGTTTACAACGTTACATTTGTGTAGAATGTGGAAAGATATTTACAAAACAATCTAGATTAAATGGTCATCAAAAAAATTATAAACATTCTGGTGTGAAACAAATTCAAGTTGATACTAATGTGGATACAATTAGTGATGATATTATACAAAATGTTATAGCTACAATGAAGCAAGAAAAAATTTCTGTAAATTGTAATCTCTGTGGTAAACTGATCTCAGATTTAGATCCAAGTGCTATTAATGACTTAGTTACATGTGCCTCTTGTGAGGATTCTACACTTTCTTTAATGGTAGATGGAAATGAGACAAAGGTAATTTCTCCACGTCAATACCATTGTTCTCAATGTCCTAAGCATTTTGTACGAAAGGAAAGACTAGAATTTCATGAGATGAGGCATAATGAGAATATGAACGAATTTATTTGTAGTACATGTGGAAAAGATTTTAGAGCTGAAAATTCCTTGTACGAGCATTATCTTTTCGTTCATAAAGGTGCAAGACCACACATTTGTGAATTATGTGGTAAGTCATTTCAATTGAAAGCAAGATTAAAAGAACACCACAGAATTCATACAGGTGAAAGACCATACCAGTGCGATATTTGTGGCCAACGATGTAGAACTACAAATGCTTTGAAACTTcatagaaaaattcatttttctcATAATAGATATACTTGTAATGTTTGCAATAAGTCATTCAGTAAAAAACAGAATATGAACGAACATTTAGAAAAGCATTGGAAAAACGATAAaagtgtaatgttaccacaactATTCACATGCCCAATTTGCGCAGAAGACTTTCCAACATATCGTATGTTAAAATATCATATGATAGATATTCATGAAATAAGCAGTCAGGATCCAATTTTAACTAAACAAAAACCATGGTATGAATGCGTAGAATGTCATGAGAAGTTTAAACATCAAATGTCTTTAAAGGCACATAAAGAAAGAGTACACGAGGGAAAAGTAGATCCGATTTATCAATGTGATGTATGTAAGGCTACATACAGAGTAAAACAGCTTCTGGTAAATCATATTAAAAGTAAACACAATGGAGAAAGACGTTATAAATGTGCACAATGTGAAAAAGGTTTTAATGACACTAAGTCTTTGTATAATCATGTATTATTACATACAGGAAAAAAGCCGTTTGTCTGTGAATATTGTAATATGAGCTTTAGGAGGAAAGATTCTAGAGATCATCACCGTAGAAAGCATACTGGTGAACAACCTTATCAATGTCCTGACTGTGGTGAATCATTTTCTACCTATAATAATCGGTCTAAACATCGAAAACGGGAACATGGTGAAGGAGACCCTGAATGCCCTGAATGTGGGCAAAAATGTAACAATCAACAAGAGATTAGAATACACTTAAACAAACATTTAGGGGAAAAATTGAaaaaattacgaaatataaaatGTGAGGAACTATAG
- Protein Sequence
- MDALKDILICRLCGVNIAEGKYKSIFKGSTDLINKIKETLPISISIDDNGSKYICLSCYNKITLYYKFVQEVVEYSKRFENTSQMKSLFNLSEEVSSFSQIHNDAVYTCPNCNIDLMILLISNPQGCDYTFQISLAMVNHSTKKHITKEKNMQIHKNIVPFNNAKSNAHLGHGHKTTTGSIEIMPNVASPMLPVLKQEENLNCTEALSGEQNLEIETQEKLRKQLKKSKSCEASICSRDLLKKEHENDKTYWLDSEIDCKIEKDSIELRNATLKKHDVQDENDTYKFCLKYECKLCGARYLSYLKYEFHMERHKAGKIHKYECTVCDKETSSENLLWDHYYHTHKSLQRYICVECGKIFTKQSRLNGHQKNYKHSGVKQIQVDTNVDTISDDIIQNVIATMKQEKISVNCNLCGKLISDLDPSAINDLVTCASCEDSTLSLMVDGNETKVISPRQYHCSQCPKHFVRKERLEFHEMRHNENMNEFICSTCGKDFRAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGERPYQCDICGQRCRTTNALKLHRKIHFSHNRYTCNVCNKSFSKKQNMNEHLEKHWKNDKSVMLPQLFTCPICAEDFPTYRMLKYHMIDIHEISSQDPILTKQKPWYECVECHEKFKHQMSLKAHKERVHEGKVDPIYQCDVCKATYRVKQLLVNHIKSKHNGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPFVCEYCNMSFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNNRSKHRKREHGEGDPECPECGQKCNNQQEIRIHLNKHLGEKLKKLRNIKCEEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01123228;
- 90% Identity
- -
- 80% Identity
- -