Bimp004271.1
Basic Information
- Insect
- Bombus impatiens
- Gene Symbol
- -
- Assembly
- GCA_000188095.4
- Location
- NT:91069-95323[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.9 2.5e+02 1.7 0.8 1 10 318 327 318 340 0.76 2 15 0.0062 0.39 10.5 1.4 1 23 348 371 348 371 0.92 3 15 0.0048 0.3 10.8 1.3 1 22 377 398 377 401 0.91 4 15 0.06 3.7 7.4 5.3 1 23 483 505 483 505 0.93 5 15 0.0054 0.34 10.7 0.5 1 23 512 535 512 535 0.91 6 15 0.00066 0.041 13.5 3.1 1 23 541 563 541 563 0.97 7 15 5.9e-05 0.0037 16.8 2.3 1 23 569 591 569 591 0.99 8 15 5.1e-06 0.00032 20.2 1.5 1 23 597 619 597 619 0.98 9 15 0.0011 0.07 12.8 0.2 1 23 632 655 632 655 0.93 10 15 0.00016 0.01 15.5 3.3 1 23 671 694 671 694 0.96 11 15 6.6e-05 0.0041 16.7 0.5 1 23 702 725 702 725 0.98 12 15 0.00043 0.027 14.1 0.7 1 23 731 753 731 753 0.97 13 15 0.0003 0.019 14.6 3.7 1 23 759 781 759 781 0.98 14 15 3e-06 0.00019 20.9 1.6 1 23 787 810 787 810 0.98 15 15 0.00015 0.0095 15.5 1.5 2 23 816 837 816 837 0.97
Sequence Information
- Coding Sequence
- ATGGATACTTCAAAGGATACATTAATATGTCGTTTATGTGGTGTAAATCTTGTAAAAGGAAAGCATAAAAGTATCTTTGAAGGATCAACagatttaatacataaaataaaggaaacatTGCCAATTTCAATATCTATTGATGATAATGGCtcaaaatatgtatgtttgtCATGTTATgacaaaattactttttactaCAAATTTATTCAAGAAGTATTGGAATATTCtaaaagattagaaaatgTATCACAAATAGAATCCTTCTTTGATCTATCTAAAGAAGTAACAGACTTTTCACAAATTCATAGTGATGCTATATATACATGTCCAAATTGTAATGTagatttaatgattttattagtTAGTAATCCTCAAGGCTGTGATTATACCTTCCAAATCTCATTAGCTATGGTAAATCATTCTGAAAACAAacatataaagaaaaagaatatacaaatacataaaaatgtagtACATcttaataatactaaaaataatatacatttaaaacatggaaacaaaacaacaattactgaagatattgaaaatatgcCTAATCAAGAAGTAAGCCTAACATTACCTGTATTAATCTCAACAAACTactacaaagaagaaaatttaaattgtattgaTGCATTATCTAGCAAACAAAACACAAAAATTGAAGTAGAAAAAGACACAAGAGAAGATCTTAAGGAATCTAATTCTGTTCATCtctcaaaaatatcaaaagtacaAGAAATATCACATGtgtctaataatttaatggattatgtttataattctGCAGATCCATTAGTGAAAAATGAACCTGAGAGTGATAATACTTATTGGCTAGACAGTGAGACTGATTATAAAAGTGAGAAAGATACATGTATAACATCACAAGACACTATGCTTGAACAAAATGATATACAAgatgaaaatgatatatataaatcttgtttaaaatatgtatgtaaattatgtGGTGCTCGCTATCTTTCACacttaaaatatgaatttcacaTGGAAAGACACAAGCTAGGTAAAACAGATAGATATGAATGTACATTATGTGATAAAGAAACAAGTAATGAAAACTTATTATGGGATCATTATTTTCACACACACAAGAGTTTACAACGTTATATTTGCGTAGAGtgtggaaaattatttacaaaacgaACTAGATTGAATGGGcatcaaaaaaattataaacattctggtgtaaaacaaatacaaattggTACTAGTGAAGATGATATTAGTGAAGATGTCATACAAAAAGCTATAGCAACAACAAAACAGGAGAAAGTATCTATAAATTGTAATCTTTGTGGTAAACTAATTTCAGACTTAGATCCAGATGCTATTAATGACTTAGTTACATGTGCTACTTGTGAAGATTCTACACTTTCTTTAATGATAGATGGAAATGAGACAAAAGTTATTTCTCCACGTCAATATCATTGTTCTAAGTGTCCTAAACATTTTGTACGAAAAGAAAGACTAGAATTTCATGAAATGAGgcataatgaaaatatgaatgaatTCATTTGTAGTACTTGTGGAAAAGATTTTAGAGcagaaaattctttatatgAACATTACCTTTTTGTTCATAAAGGGGCAAGACCTCACATTTGTGAACTATGTGGTAAGTCATTTCAGTTAAAAGCTAGATTAAAAGAACATCATCGAATTCATACAGGTGAGAGACCATATCAATGTGATATCTGTGGTCAACGATGTAGAACTACAAACGCTTTAAAGCttcatagaaaaattcatttttctcataaCAGATATATTTGTAACGTATGTAATAAGTCATTTagtaaaaagcaaaatatgaATGAACATTTAGAGAAGCAttggaaaaatgataaaagtgtAACATTACCACAATTATTTACATGTCCAATTTGTGTAGAAGATTTTCCAACCTACCGtatgttaaaatatcatatggtacaaattcatgaaataaataatcaggatccaattttaataaaacaaaaaccaTGGTATGAATGTGCAGAATGTCACGAGAAATTTAAACATCAAATGTCTTTAAAAGCACATAAAGAGAGAGTACATGAAGGAAGAGTAGACCCTATTTATCAGTGTGACATATGTAATGCAACATATAAAGTAAAACAACTTTTAGTAAATcatattaaaagtaaacatGATGGTGAAAGACGTTATAAATGTGCTCAATGTGAAAAAGGATTTAATGACACTAAATCTTTATATAATCATGTATTATTACATACTGGAAAAAAACCATTTGTCTGTGAATATTGTAATACGAGTTTTAGAAGAAAAGACTCCAGAGATTATCACCGTAGAAAACATACTGGTGAACAACCTTATCAATGTCCAGATTGTGGTGAATCATTTTCTACCTATAATAATCGATCTAAacatcgaaagaaagaacacgGAGAAGGAGATCCAGAGTGTCCAGAATgtggaaaaaaatgtaataatcaacaagaaattagaatacatttaaataaacatctGGGagagaaactaaaaaaattacaaaatataaaatctaagTAG
- Protein Sequence
- MDTSKDTLICRLCGVNLVKGKHKSIFEGSTDLIHKIKETLPISISIDDNGSKYVCLSCYDKITFYYKFIQEVLEYSKRLENVSQIESFFDLSKEVTDFSQIHSDAIYTCPNCNVDLMILLVSNPQGCDYTFQISLAMVNHSENKHIKKKNIQIHKNVVHLNNTKNNIHLKHGNKTTITEDIENMPNQEVSLTLPVLISTNYYKEENLNCIDALSSKQNTKIEVEKDTREDLKESNSVHLSKISKVQEISHVSNNLMDYVYNSADPLVKNEPESDNTYWLDSETDYKSEKDTCITSQDTMLEQNDIQDENDIYKSCLKYVCKLCGARYLSHLKYEFHMERHKLGKTDRYECTLCDKETSNENLLWDHYFHTHKSLQRYICVECGKLFTKRTRLNGHQKNYKHSGVKQIQIGTSEDDISEDVIQKAIATTKQEKVSINCNLCGKLISDLDPDAINDLVTCATCEDSTLSLMIDGNETKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMNEFICSTCGKDFRAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGERPYQCDICGQRCRTTNALKLHRKIHFSHNRYICNVCNKSFSKKQNMNEHLEKHWKNDKSVTLPQLFTCPICVEDFPTYRMLKYHMVQIHEINNQDPILIKQKPWYECAECHEKFKHQMSLKAHKERVHEGRVDPIYQCDICNATYKVKQLLVNHIKSKHDGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPFVCEYCNTSFRRKDSRDYHRRKHTGEQPYQCPDCGESFSTYNNRSKHRKKEHGEGDPECPECGKKCNNQQEIRIHLNKHLGEKLKKLQNIKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01123228;
- 90% Identity
- iTF_00219968;
- 80% Identity
- -