Tcar024663.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetragonula carbonaria
Gene Symbol
-
Assembly
GCA_010645115.1
Location
WIUU01006409.1:635-3459[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 4.8 6.6e+02 1.7 0.8 1 10 299 308 299 321 0.76
2 15 0.0076 1 10.5 1.4 1 23 329 352 329 352 0.92
3 15 0.031 4.3 8.6 1.2 1 22 358 379 358 382 0.87
4 15 0.073 10 7.4 5.3 1 23 464 486 464 486 0.93
5 15 0.0066 0.91 10.7 0.5 1 23 493 516 493 516 0.91
6 15 0.00079 0.11 13.6 3.1 1 23 522 544 522 544 0.97
7 15 7.2e-05 0.0099 16.9 2.3 1 23 550 572 550 572 0.99
8 15 2.2e-06 0.00031 21.6 2.2 1 23 578 600 578 600 0.98
9 15 0.021 2.9 9.1 0.1 1 23 613 636 613 636 0.93
10 15 0.0002 0.027 15.5 3.3 1 23 652 675 652 675 0.96
11 15 5.2e-05 0.0072 17.3 0.3 1 23 683 706 683 706 0.98
12 15 0.00052 0.073 14.1 0.7 1 23 712 734 712 734 0.97
13 15 0.0004 0.056 14.5 5.2 1 23 740 762 740 762 0.98
14 15 3.3e-06 0.00046 21.1 1.5 1 23 768 791 768 791 0.98
15 15 0.00069 0.096 13.8 1.2 2 23 797 818 797 818 0.97

Sequence Information

Coding Sequence
ATGGATGCTTCAAAAGATGTATTAATATGTCGTTTATGTGGTGTAAATCTTAGAGAAGGAAAGCATGAAAGTATCTTTGAAGGTTCGACAgatttaatacataaaataaaggaaacaTTACCAATAACGataTCTATTGATGATAGTGGCTCAAAGTATGTATGTTTATCATGTTatgataaaatcattttttactaCAAATTTATTCAAGAGGTATTAGAGTATtctaaaaaattggaaaagacATCGCAGATAAAAtccttttttaatctttctaaAGAAGTAACAGACTTTTCTCAGATACATAGCGATGCTGTGTATACATGTCCAAATTGTAATGTAgatttaatgattttattagTTAGTAATTCTCAAAGCTGTGATTACACCTTCCAAATCTCATTAGCTATGGTAAAtcattctgaaaaaaaacatattccAAAACAAAAGTATATAAACGTATATAAAGATATAGTACATTTTAATGAtgctaaaaataatatatatataaaacaaggAGACAAAACAacaattgatgaaaatattgaaaatacaactaataaagtaaatctaacATTACCTGTTttacaagaagaaaatttaaactgTATCAATGAATTATCTGGCaaagaaaacttaaaaattgaGGTAGAgaaagaattaagaaaaaattttaaagaagaaacattgCATGTATCTAGTAATTCACTTGATTATGATTATGATTCTACAGATCCATTAGTAAAAAATGAACCTGAAAGTGATAATGCTTATTGGATAGATAGTGAAACTGATTACAAAAGTGAGAAAGATACATGTGTAACTAAATCGCAAGACATGCTTGAAAAAGATGATATACAAgatgaaaatgatatatataaatcttgtttaaagtatgtatgtaaattatgTGGAGCCCGTTATCTTTcacatttaaaatatgaatttcacatGGAAAGGCACAAATTAggtaaaatagataaatatgaATGCACTCTATGTGATAAAGAAAcaagtaatgaaaatttattatggGATCATTATTTCCACACACACAAAAGTTTACAACGTTATATTTGTATAGAATGTGgcaaattatttacaaaacgaTCTAGACTAAATGGgcatcaaaaaaattataaacattctGGTGTGAAACAAATACAAGTTGGTACTAGTGAAGATACTATTAGTGAAGATGTCATACAAAAAGCTATAGCAACaacaaaacaagaaaaagtaTCTATAAATTGTAATCTTTGTGGCAAATTGATCTCAGATTTAGATCCGGATGCTATTAATGACTTAGTTACGTGCGTTACTTGTGAAGATTCTACACTTTCTTTGATGATAGatggaaatgaaacaaaagtcATTTCTCCGCGTCAATATCATTGTTCTAAATGTCCTAAACattttgtaagaaaagaaagactagaatttcatgaaatgagacataatgaaaatatgaatgaatttATCTGTAGTACTTGTGGAAAAGATTTTAGAGCAGAAAATTCTTTATATGAACACTATCTTTTTGTTCATAAAGGAGCAAGACCTCATATTTGTGAATTATGTGGTAAGTCATTTCAATTGAAAGCTAGATTAAAAGAACATCATCGAATTCATACAGGAGAAAGACCATATCAATGTGATATTTGTGGCCAACGATGTAGAACTACAAATGCTTTGAAACTTCacagaaaaattcatttttcttataatagatatacttgtaatatatgtaataaatcatTCAGTAAAAAGCAGAATATGAATGAACATTTAGAAAAGCAttggaaaaatgataaaagtgTAACATTACCACAATTATTTACATGCCCAATTTGTATAGAGGATTTTCCGACATATCGCatgttaaaatatcatatGGTAGAAgatcatgaaataaataatcaggATCCAATTCTGACAAAACAAAAACCATGGTACGAATGTGCAGAATGTcatgagaaatttaaacatcAGATGTCTTTAAAAGCACATAAAGAAAGGATACATGAGGGAAGAATAAATCCTACTTATCAATGTGACATATGTGATGCTACATATAGAGTAAAACAACTTTTAGTAAATCACATTAAAAGTAAACATAATGGCGAAAGACGTTATAAATGTGCACAGTGTGAAAAAGGATTTAATGACACGAAATCTTTATATAATCATGTATTATTACACACTGGGAAAAAACCATTTGTCTGTGAATATTGTAATATGAGTTTTAGAAGAAAAGACTCCCGAGATCATCATCGTAGGAAACATACTGGTGAACAACCTTATCAATGTCCGGATTGTGGGGAATCGTTTTCTACTTACAATAATCGATCTAAACATCGAAAAAGAGAACATGGAGAAGGAGACCCTGAATGCCCAGAGTGTGGGCAAAGATGTAATAATCAACAAGAAATTagaatacatttaaataaacatttgggagaaaaattaaaaaaattacaaaatatagaatctgagaagatataa
Protein Sequence
MDASKDVLICRLCGVNLREGKHESIFEGSTDLIHKIKETLPITISIDDSGSKYVCLSCYDKIIFYYKFIQEVLEYSKKLEKTSQIKSFFNLSKEVTDFSQIHSDAVYTCPNCNVDLMILLVSNSQSCDYTFQISLAMVNHSEKKHIPKQKYINVYKDIVHFNDAKNNIYIKQGDKTTIDENIENTTNKVNLTLPVLQEENLNCINELSGKENLKIEVEKELRKNFKEETLHVSSNSLDYDYDSTDPLVKNEPESDNAYWIDSETDYKSEKDTCVTKSQDMLEKDDIQDENDIYKSCLKYVCKLCGARYLSHLKYEFHMERHKLGKIDKYECTLCDKETSNENLLWDHYFHTHKSLQRYICIECGKLFTKRSRLNGHQKNYKHSGVKQIQVGTSEDTISEDVIQKAIATTKQEKVSINCNLCGKLISDLDPDAINDLVTCVTCEDSTLSLMIDGNETKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMNEFICSTCGKDFRAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGERPYQCDICGQRCRTTNALKLHRKIHFSYNRYTCNICNKSFSKKQNMNEHLEKHWKNDKSVTLPQLFTCPICIEDFPTYRMLKYHMVEDHEINNQDPILTKQKPWYECAECHEKFKHQMSLKAHKERIHEGRINPTYQCDICDATYRVKQLLVNHIKSKHNGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPFVCEYCNMSFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNNRSKHRKREHGEGDPECPECGQRCNNQQEIRIHLNKHLGEKLKKLQNIESEKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01123228;
90% Identity
iTF_00983133;
80% Identity
-