Bign016983.1
Basic Information
- Insect
- Bombus ignitus
- Gene Symbol
- -
- Assembly
- GCA_014825875.1
- Location
- CM026159.1:3949001-3952077[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.1 5.4e+02 1.7 0.8 1 10 316 325 316 338 0.76 2 15 0.0081 0.86 10.5 1.4 1 23 346 369 346 369 0.92 3 15 0.0062 0.66 10.8 1.3 1 22 375 396 375 399 0.91 4 15 0.078 8.2 7.4 5.3 1 23 481 503 481 503 0.93 5 15 0.0071 0.75 10.7 0.5 1 23 510 533 510 533 0.91 6 15 0.00085 0.09 13.5 3.1 1 23 539 561 539 561 0.97 7 15 0.001 0.11 13.3 3.1 1 23 567 589 567 589 0.99 8 15 4.3e-06 0.00045 20.8 2.2 1 23 595 617 595 617 0.98 9 15 0.0015 0.15 12.8 0.2 1 23 630 653 630 653 0.93 10 15 0.00021 0.022 15.5 3.3 1 23 669 692 669 692 0.96 11 15 8.7e-05 0.0092 16.7 0.5 1 23 700 723 700 723 0.98 12 15 0.00056 0.059 14.1 0.7 1 23 729 751 729 751 0.97 13 15 0.00043 0.046 14.5 5.2 1 23 757 779 757 779 0.98 14 15 3.9e-06 0.00041 20.9 1.6 1 23 785 808 785 808 0.98 15 15 0.0003 0.032 15.0 0.9 2 23 814 835 814 835 0.97
Sequence Information
- Coding Sequence
- ATGGATACTTCAAAGGATACATTAATATGTCGTTTATGTGGTGTAAATCTTGTAGAAGGAAAACATAAAAGTATCTTTGAAGGATCAACGGATTTAGTACATAAAATAAAGGAAACATTGCCAATTTCAATATCTATTGATGATAATGGTTCAAAATATGTATGTTTGTCATGTTATGACAAAATTACTTTCTACTACAAATTTATTCAAGAAGTACTGGAATATTCTAAAAGATTAGAAAATGCATCACAAATAGAATCCTTCTTTGATCTATCTAAAGAAGTAACAGACTTTTCACAAATTCATAGTGATGCTATATATACATGTCCAAATTGTAATGTAGATTTAATGATTTTATTAGTTAATAATCCTCAAGGCTGTGATTATACCTTCCAAATCTCATTAGCTATGGTAAATCATTCTGAAAAAAAACATATAAAGAAAAAGAATATACAAATACATAAAAATGTAGTACATCTAAATAATACTAAAAATAATGTACATTTGAAACATGGAAACAAAACAACAATTACTGAAGATATTGAAAATATGCCTAATCAAGAAGTAAACCTAACATTACCTGTATTAATCTCAACAAACTACTACAAAAAGGAAAATTTAAATTGTATTGATGCATTATCTAGCAAACAAAACACAAAAATTGATGTAGAAAAAGACACAAGAGAAGATCTTAAGGAATCTAATTCTGTTCATCTCTCAAAAATATCAAAACTACAAAAAATATCACATGTGTCTAATAATTTAATGGATTATGATTATGATTGTGCAGTGAAAAATGAACCTGAAAGTGATAATACTTATTGGCTAGACAGTGAGACTGATTATAAAAGTGAGAAAGATACATGTATAACAACATCACAAGACACTATGCTTGAACAAAATGATATACAAGATGAAAATGATATATATAAATCTTGTTTAAAATATGTATGTAAATTATGTGGTGCTCGCTATCTTTCACACTTAAAATATGAATTTCACATGGAAAGACACAAGCTAGGTAAAATAGATAAATATGAATGTACATTATGTGATAAAGAAACTAGTAATGAAAACTTATTATGGGATCATTATTTTCACACGCATAAGAGTTTGCAACGTTATATTTGTGTAGAGTGTGGAAAATTATTTACAAAACGAACTAGATTGAATGGACATCAAAAAAATTATAAACATTCTGGTGTAAAACAAATACAAGTTGGTACTAGTGAAGATACTATTAGTGAAGATGTCATACAAAAAGCTATAGCAACAACAAAACAGGAGAAAGTATCTATAAATTGTAATCTTTGTGGTAAACTAATTTCAGACTTAGATCCAGATGCTATTAATGACTTAGTTACATGTGCTACTTGTGAAGATTCTACACTTTCTTTAATGATAGATGGAAATGAGACAAAAGTAATTTCTCCACGTCAATATCATTGTTCTAAGTGTCCTAAACATTTTGTACGAAAAGAAAGACTAGAATTTCATGAAATGAGGCATAATGAAAATATGAATGAATTCATTTGTAGTACTTGTGGAAAAGATTTTAGAGCAGAAAATTCTTTATATGAACATTACCTCTTTGTTCATAAAGGAGCAAGACCTCACATTTGTGAACTATGTGGTAAGTCATTTCAGTTAAAAGCTAGATTAAAAGAACATCATCGAATTCATACAGGTGAGAGACCATATCAATGTGATATCTGTAGTCAACGATGTAGAACTACAAACGCTTTAAAGCTTCATAGAAAAATTCATTTTTCTCATAACAGATATACTTGTAACGTATGTAATAAGTCATTTAGTAAAAAGCAAAATATGAATGAACATTTAGAGAAGCATTGGAAAAATGATAAAAGTGTAACATTACCACAATTATTTACATGTCCAATTTGTGTAGAAGATTTTCCAACCTACCGTATGTTAAAATATCATATGGTACAAATTCATGAAATAAACAATCAGGATCCAATTTTGATAAAACAAAAACCGTGGTATGAATGTGCAGAATGTCACGAGAAATTTAAACATCAAATGTCTTTAAAAGCACATAAAGAGAGAGTACATGAAGGAAGAGTAGACCCTATTTATCAGTGTGACATATGTAATGCAACATATAGAGTAAAACAACTTTTAGTAAATCATATTAAAAGTAAACATGATGGTGAGAGACGTTATAAATGTGCTCAATGTGAAAAAGGATTTAATGACACTAAATCTTTATATAATCATGTATTATTGCATACTGGAAAAAAACCATTTGTTTGTGAATATTGTAATATGAGTTTTAGAAGAAAAGACTCAAGAGATCATCACCGTAGAAAACATACTGGTGAACAACCTTATCAATGTCCAGATTGTGGTGAATCATTTTCTACCTATAATAATCGATCTAAACATCGAAAGAAAGAACACGGAGAAGGAGATCCAGAGTGCCCAGAATGTGGAGAAAAATGTAGTAATCAACAAGAAATTAGAATACATTTAAATAAACATCTGGGAGAGAAATTAAAAAAATTACAAAATATAAAATATAATTCATAA
- Protein Sequence
- MDTSKDTLICRLCGVNLVEGKHKSIFEGSTDLVHKIKETLPISISIDDNGSKYVCLSCYDKITFYYKFIQEVLEYSKRLENASQIESFFDLSKEVTDFSQIHSDAIYTCPNCNVDLMILLVNNPQGCDYTFQISLAMVNHSEKKHIKKKNIQIHKNVVHLNNTKNNVHLKHGNKTTITEDIENMPNQEVNLTLPVLISTNYYKKENLNCIDALSSKQNTKIDVEKDTREDLKESNSVHLSKISKLQKISHVSNNLMDYDYDCAVKNEPESDNTYWLDSETDYKSEKDTCITTSQDTMLEQNDIQDENDIYKSCLKYVCKLCGARYLSHLKYEFHMERHKLGKIDKYECTLCDKETSNENLLWDHYFHTHKSLQRYICVECGKLFTKRTRLNGHQKNYKHSGVKQIQVGTSEDTISEDVIQKAIATTKQEKVSINCNLCGKLISDLDPDAINDLVTCATCEDSTLSLMIDGNETKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMNEFICSTCGKDFRAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGERPYQCDICSQRCRTTNALKLHRKIHFSHNRYTCNVCNKSFSKKQNMNEHLEKHWKNDKSVTLPQLFTCPICVEDFPTYRMLKYHMVQIHEINNQDPILIKQKPWYECAECHEKFKHQMSLKAHKERVHEGRVDPIYQCDICNATYRVKQLLVNHIKSKHDGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPFVCEYCNMSFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNNRSKHRKKEHGEGDPECPECGEKCSNQQEIRIHLNKHLGEKLKKLQNIKYNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01123228;
- 90% Identity
- iTF_00219968;
- 80% Identity
- -